PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_010720_zxac.t1
Common NameSOVF_010720
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 1185aa    MW: 131947 Da    PI: 9.4138
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_010720_zxac.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-084681340
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40
                        W++eE +++++  +++G++ Wk++a+ +  +R+ +++
  Sp_010720_zxac.t1 46 QWSKEELQRFYESYRKYGKD-WKKVAASVR-NRSMEMV 81
                       5*****************99.*********.**98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-104290IPR009057Homeodomain-like
SMARTSM007177.4E-44391IPR001005SANT/Myb domain
PfamPF002492.7E-74681IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-54681IPR009057Homeodomain-like
CDDcd001674.39E-64781No hitNo description
PfamPF065842.5E-31645745IPR033471DIRP domain
SMARTSM011358.3E-57645746IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1185 aa     Download sequence    Send to blast
MAPTRKSRSV NKRFTYPNEI SPIKDGDSAN KNNKRKRKVS DMLGAQWSKE ELQRFYESYR  60
KYGKDWKKVA ASVRNRSMEM VEALYTMNRA YLSLPEGTAS VVGLIAMMTD HYSVLEGSDS  120
EQESNDGVGI PRKPHKRTRG KVQPNPARNL SDVPQSQSVA SSYGCLSLLK KKRSGGNQPR  180
AVGKRTPRIP VRYTYDKDSI GRYISPVQQG PKSKLDADDD DVAHEVALAL AEASHRGGSP  240
QVSQTPNKRR ATASKSPGGL GERVCSESEM TSAKNAGNEV DDDGCEGSLG STEEENNFSR  300
VKPHSGGRQG AGSFIQQKAK KSYEKKVEVE DTRHKYGDDI KEACSGTEGG QRFSSFDLKL  360
GSESGDVTFP RSSGQASKKR SKKVLFGGDE GVALDALQAL ADLSFMMPSS TAEAESTALL  420
KEEKERDFDK YRPQDTIPSS QRGKPKASPS KKRGDHLVLD TQVSESKQIK PGKASVTGST  480
PGAVKKDLLL RKRKPKPSVS KQNVTSEVQM DAGANVVQEN EVSDQGIKSV NKSRRVSNHA  540
SQQQLGHLVR ISEHSSSSTD IRRDGDDSAV SSVHASETTK ANGSTKSRAR RKVDKSQIHR  600
SDIFVNEQPN KSGQPYHDKT VYLKENLCSC LLNHRVRRWC VYEWFYSAID YPWFAKSEFV  660
EYLYHVGLGH VPRLTRVEWG VIRSSLGKPR RFSQQFLKEE KEKLNYYRES VRSHYTELRM  720
GKREGLPTDL ARPLTVGQRV ISIHPRSREI HNGNVLTVDH NRCRIQFDRP ELGVEFVKDI  780
DCMPLNPVEN MPTSLQRHNV AFDKFYEALK QFKVDRPEDR MKEEITKLTQ GQKGENAEGT  840
SNVAPFYLMT NLSKQAKEGF VSPSLHEKVG HSDVMSPQQA LTQQSALSQL QAKEADIRAL  900
AELSRALDKK NALVTELKRM NDDVYEDMSL KDVDSFKKQY AAVLVQLNEV LDQVSSALMC  960
LRQRNTYQGN SLVPWQKTKA SLDDHGSIVS SLNCLPCDSQ GAGSHVCEIV DTSVIKARKM  1020
VDAAVQAVSS LNAAADSIQK IEEVVDFLNN RLLVDDSRMS VQTTQLTGSS TRQNQPSPCT  1080
LNVVASQQAL DSRSNGAVAQ CEAQIPSELV ANCVATLLMI QVSLENCLSI SYIWQNMPGL  1140
QVQHILLNLW TSALMTCWIY DEFIVTYSFR FATLAFSRSL MHLVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1489494LRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862140.10.0protein ALWAYS EARLY 3 isoform X1
TrEMBLA0A0K9S1C30.0A0A0K9S1C3_SPIOL; Uncharacterized protein
STRINGXP_010667784.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding