PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_010770_sfci.t1

Common Name

SOVF_010770

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Dof

Protein Properties

Length: 257aa MW: 28598 Da PI: 4.3324

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_010770_sfci.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	117.1	7.1e-37	16	73	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 a +cprC s+ntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+rk+++s+ Sp_010770_sfci.t1 16 APNCPRCASSNTKFCYYNNYSLSQPRFFCKGCRRYWTRGGSLRNVPVGGGCRKSRRSR 73 568***************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-21	3	62	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.4E-31	17	71	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.183	17	71	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	19	55	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MPMTTDSRWR ATINPAPNCP RCASSNTKFC YYNNYSLSQP RFFCKGCRRY WTRGGSLRNV 60 PVGGGCRKSR RSRSTKGFTR ALTGPHSDND PSSNSSSSGS ESGCPDIDMA AVFAKFLNHG 120 QQNANEEATT NTSSEASYGS PISSSCGLEL ENGLEYQKFS DEFLDLLPYD HNRQLQAEEV 180 NQGFINPDLA SFDDIIEDVF WSEDSNFSGF TWQPVSQMQE FDPSLPPADE SETSTNPLPS 240 DNWSYFDSTE FETFSGP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021837048.1	0.0	dof zinc finger protein DOF3.5-like
TrEMBL	A0A0K9RZP9	0.0	A0A0K9RZP9_SPIOL; Uncharacterized protein
STRING	XP_010680114.1	1e-130	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	7e-30	Dof family protein