PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_011340_ydgz.t1
Common NameSOVF_011340
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 273aa    MW: 29514.4 Da    PI: 9.0569
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_011340_ydgz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.16e-20136186255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f tae+Aa a+++a+ +++g
  Sp_011340_ydgz.t1 136 HYRGVRRRP-WGKYAAEIRDPAKNG--ARVWLGTFETAEDAALAYDRAAFRMRG 186
                        8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.99E-31135194No hitNo description
Gene3DG3DSA:3.30.730.102.8E-32135194IPR001471AP2/ERF domain
PfamPF008478.4E-14136186IPR001471AP2/ERF domain
PROSITE profilePS5103224.54136194IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-24136196IPR016177DNA-binding domain
SMARTSM003804.2E-40136200IPR001471AP2/ERF domain
PRINTSPR003676.1E-11137148IPR001471AP2/ERF domain
PRINTSPR003676.1E-11160176IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MSTISYLETD LAVLDSIRRH LLEDWDPRVI GASTISNGSG PVYRRNSSFS RLYPCLTENW  60
GQLPLKEDDS EDMVLFGVLR DAVHTGWSPE SMSEIDSGSP TTVIVKSEPV ESPVSVTVGE  120
APVAVVPMAA PSRGKHYRGV RRRPWGKYAA EIRDPAKNGA RVWLGTFETA EDAALAYDRA  180
AFRMRGSKAM LNFPLRVNSG EPDPVRITSK RSSPERSTSS LSTSSISSSD SGSPTKRRKK  240
VVVGQVGKGV EGLQVGCQLG VGPLPLGDQL LVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-41132201170ATERF1
3gcc_A6e-41132201170ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856079.10.0ethylene-responsive transcription factor 2-like
SwissprotO803371e-84EF100_ARATH; Ethylene-responsive transcription factor 1A
TrEMBLA0A0K9RZH60.0A0A0K9RZH6_SPIOL; Uncharacterized protein
STRINGXP_010677103.11e-154(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-67ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]