PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_011410_jgxg.t1

Common Name

SOVF_011410

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

SBP

Protein Properties

Length: 793aa MW: 88803.2 Da PI: 6.7302

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_011410_jgxg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	117	9.9e-37	132	208	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cqv+gCe+d+ e+k yhrrh+vC v+++a++vl++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k++ Sp_011410_jgxg.t1 132 CQVPGCEVDIRELKGYHRRHRVCLVCANASSVLIDGQSKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKSS 208 *************************************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-28	128	193	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.804	129	206	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.81E-34	130	210	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-27	132	206	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055070	Biological Process	copper ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 793 aa Download sequence Send to blast
MDLPPLTGGG EESGTPFEWS DLFDFTIDDQ LLLNLDSSDN QKIQIETPVV TPAAGGDGEG 60 FGKTLPVNGG GEGSADRVRK RDPRMICENF LAGRVPCACP ELDAMMAEEE EEEAGPGKKR 120 PRMGRTPGVA KCQVPGCEVD IRELKGYHRR HRVCLVCANA SSVLIDGQSK RYCQQCGKFH 180 VLSDFDEGKR SCRRKLERHN NRRRRKSSDF RGAVEKEPLG DVQTEDVFSD GEAGKDNAWS 240 SSQIAEREDS KDGTLSNLCS ALESQNIESD SVLTFTQVNK VIDNLEQDSS PPSDTKSAYS 300 SVCPTGRISF KLYDWNPAEF PRRLRHQIFQ WLASMPVELE GYIRPGCTIL TIFVSMPQYM 360 WVKLFDDPVS YVQSSVGVGG ILSGRGAALV YLNDTSFRIM REGASVMKVK VAVRTPKLHY 420 VYPPCFEAGK PMDLLACGSN LLQPKFRSLI SFAGKYLAHD YYVAFPRGKG EDKPTIDHDR 480 QFCRIYVPHT EPSYFGPAFV EVENECGLSN FIPILIGDEH VCSEIKMIHQ KHDCSYCRKK 540 LHCKSSGSSY GTCEISCSRQ AALSEFMLDV AWLLKRPCSE KLHCILTCSQ IQRYNGLLKF 600 LISNRSTSIL EKILQSLQIV FDEVDSCDVT NDDTDIDRRL LKEHIVHAKD FLRQSAHKKE 660 LILHQAEGCI PKVDKCLGSF AHDDLLPVDR TACQVTEMRV DNNCTVLEYS NSQNEGESIS 720 LINGEVTMNV KDNREWARKS CNNVISKKFV NTRPLVYMIA VVAVCFGVCA VVLHPYKVTK 780 IAVTIRRCVF DNT

Sequence ? help Back to Top

Protein Sequence Length: 793 aa Download sequence Send to blast

MDLPPLTGGG EESGTPFEWS DLFDFTIDDQ LLLNLDSSDN QKIQIETPVV TPAAGGDGEG  60
FGKTLPVNGG GEGSADRVRK RDPRMICENF LAGRVPCACP ELDAMMAEEE EEEAGPGKKR  120
PRMGRTPGVA KCQVPGCEVD IRELKGYHRR HRVCLVCANA SSVLIDGQSK RYCQQCGKFH  180
VLSDFDEGKR SCRRKLERHN NRRRRKSSDF RGAVEKEPLG DVQTEDVFSD GEAGKDNAWS  240
SSQIAEREDS KDGTLSNLCS ALESQNIESD SVLTFTQVNK VIDNLEQDSS PPSDTKSAYS  300
SVCPTGRISF KLYDWNPAEF PRRLRHQIFQ WLASMPVELE GYIRPGCTIL TIFVSMPQYM  360
WVKLFDDPVS YVQSSVGVGG ILSGRGAALV YLNDTSFRIM REGASVMKVK VAVRTPKLHY  420
VYPPCFEAGK PMDLLACGSN LLQPKFRSLI SFAGKYLAHD YYVAFPRGKG EDKPTIDHDR  480
QFCRIYVPHT EPSYFGPAFV EVENECGLSN FIPILIGDEH VCSEIKMIHQ KHDCSYCRKK  540
LHCKSSGSSY GTCEISCSRQ AALSEFMLDV AWLLKRPCSE KLHCILTCSQ IQRYNGLLKF  600
LISNRSTSIL EKILQSLQIV FDEVDSCDVT NDDTDIDRRL LKEHIVHAKD FLRQSAHKKE  660
LILHQAEGCI PKVDKCLGSF AHDDLLPVDR TACQVTEMRV DNNCTVLEYS NSQNEGESIS  720
LINGEVTMNV KDNREWARKS CNNVISKKFV NTRPLVYMIA VVAVCFGVCA VVLHPYKVTK  780
IAVTIRRCVF DNT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	5e-38	129	214	3	88	squamosa promoter binding protein-like 7
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	192	204	RRKLERHNNRRRR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00604	PBM	Transfer from AT5G18830	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849148.1	0.0	squamosa promoter-binding-like protein 7
TrEMBL	A0A0K9RZG7	0.0	A0A0K9RZG7_SPIOL; Uncharacterized protein
STRING	XP_010666331.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	squamosa promoter binding protein-like 7