PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_011520_xmqu.t1
Common NameSOVF_011520
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 465aa    MW: 52148.2 Da    PI: 5.6245
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_011520_xmqu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4319.2e-132944651374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l+e+L++cA+avs++dl  a++l+++l++++s +g+p+qRl ay++e+L ar ++s+ ++ykal+++e +   s e l+++++++ev+P++k
  Sp_011520_xmqu.t1  94 LKEVLIACAKAVSNEDLLTAEWLISELQHMVSVSGEPIQRLGAYILEGLIARYSSSGISIYKALNCKEPT---SGEFLSYMQVLYEVCPYFK 182
                        5789*****************************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f+++ aN aI ea+++e+r+HiiDf+i qG QW++L+qaLa+Rp+gpp++RiTg+++++s+  +   ++ +gerL  +A+++++pfef++ +
  Sp_011520_xmqu.t1 183 FGYMSANGAIAEALKNEDRIHIIDFQIAQGSQWLSLIQALAARPGGPPRVRITGIDDSTSQfaRGGGVNIVGERLCTLAKACNLPFEFHAAA 274
                        *********************************************************999899999************************88 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                         +  +++++++L +k++EalaVn+ + lh+++desv  +++rd++L+lvks sPkvv++ve e+++ns++F  rfle+l+yysa+f+s++++
  Sp_011520_xmqu.t1 275 LSCNNEVKIQNLVLKSEEALAVNFPFLLHHIPDESVGPQNHRDTLLRLVKSWSPKVVTLVEYELNTNSAPFYPRFLETLDYYSAIFESINVT 366
                        88999*************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        lpr+ +eri+vE+++l++eivn++acegaer+erhe  +kWr+r+++aGF+p+pls  +++++k ll+k++ + y +ee++g+l+lgW++r+
  Sp_011520_xmqu.t1 367 LPRDRKERINVEQHCLAKEIVNIIACEGAERIERHELHGKWRSRFSMAGFRPYPLSPLVNATIKNLLHKYS-RSYGLEERDGTLYLGWMNRA 457
                        ***********************************************************************.66****************** PP

               GRAS 367 LvsvSaWr 374
                        +v+ +aW+
  Sp_011520_xmqu.t1 458 MVTSCAWQ 465
                        *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.52468446IPR005202Transcription factor GRAS
PfamPF035143.2E-12994465IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MQNLRNLQGI YCTFESSLLS GVEKDNFCGS PSTGSYSGNG STVSLLDHES PSSDNDNLRD  60
QLRELETVMM EPTSDNFDSN NWQHLGEMIS RGELKEVLIA CAKAVSNEDL LTAEWLISEL  120
QHMVSVSGEP IQRLGAYILE GLIARYSSSG ISIYKALNCK EPTSGEFLSY MQVLYEVCPY  180
FKFGYMSANG AIAEALKNED RIHIIDFQIA QGSQWLSLIQ ALAARPGGPP RVRITGIDDS  240
TSQFARGGGV NIVGERLCTL AKACNLPFEF HAAALSCNNE VKIQNLVLKS EEALAVNFPF  300
LLHHIPDESV GPQNHRDTLL RLVKSWSPKV VTLVEYELNT NSAPFYPRFL ETLDYYSAIF  360
ESINVTLPRD RKERINVEQH CLAKEIVNII ACEGAERIER HELHGKWRSR FSMAGFRPYP  420
LSPLVNATIK NLLHKYSRSY GLEERDGTLY LGWMNRAMVT SCAWQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6110146426378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842627.10.0scarecrow-like protein 21
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A0K9RZE70.0A0A0K9RZE7_SPIOL; Uncharacterized protein
STRINGXP_010675879.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]