PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_011670_free.t1
Common NameSOVF_011670
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 169aa    MW: 19560.5 Da    PI: 8.8888
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_011670_free.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-055175223
                       EET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2  2 kCp..dCgksFsrksnLkrHirt.H 23
                       kC+   C+ sF++ksn+++H +  H
  Sp_011670_free.t1 51 KCSfeGCDHSFTTKSNMQQHVKAvH 75
                       79999***************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355362142IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.97E-83287No hitNo description
SMARTSM003552.0E-45075IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.4895080IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.0E-95176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805275IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-47893IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003555.381107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083107IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKPFSNVECL KAHIRSCHQY VNCEVCGSKH LKKNYKRHLL THGEHLPTVL KCSFEGCDHS  60
FTTKSNMQQH VKAVHLQLRP FICSIPGCGM KFAFKHVRDN HEKTGRHVHV HGDLEEFDEQ  120
FRSRPRGGRK RKVPCVEMLM RKRISPPNHC DGVLDDSSEF LSWLLSDDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131RPRGGRKRK
Functional Description ? help Back to Top
Source Description
UniProtEssential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851708.11e-122transcription factor IIIA-like
SwissprotQ84MZ43e-61TF3A_ARATH; Transcription factor IIIA
TrEMBLA0A0K9RZG01e-122A0A0K9RZG0_SPIOL; Uncharacterized protein
STRINGXP_010673198.11e-101(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.14e-64transcription factor IIIA