PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_011740_wieo.t1
Common NameSOVF_011740
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family BBR-BPC
Protein Properties Length: 231aa    MW: 25167.4 Da    PI: 10.324
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_011740_wieo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind231.46.9e-7178231144301
          GAGA_bind 144 akekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCC 235
                        ++e ++       k+pk++  +++ k+++ + kk ++++a+    ++ k+ ++  n  s + s++P+P+CsCtGa rqCY+WG+GGWqS+CC
  Sp_011740_wieo.t1  78 ITEPPSI----PIKNPKRNPIDAALKEPKPKIKKGRSSKAKGGGARKNKNPNFHNNDSSTEASGIPAPICSCTGAARQCYRWGSGGWQSSCC 165
                        2222222....345555555555555444444555555555456677889999*************************************** PP

          GAGA_bind 236 tttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                        tt+iS yPLP+s++r gaR agrKmS+ga+ klL++L+aeGydl  p+DLkdhWAkHGtnkfvti+
  Sp_011740_wieo.t1 166 TTNISEYPLPMSATRAGARTAGRKMSHGAYDKLLQRLSAEGYDLEFPIDLKDHWAKHGTNKFVTIK 231
                        *****************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012269.9E-6222231IPR010409GAGA-binding transcriptional activator
PfamPF062175.6E-6589231IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGTFRSNYPI IPEGNRTRSV PHFSWFHPGS YLSATTRNGF SPFQGTQNNP DGGLPAVPIR  60
CMPINEPTNV VADAQTQITE PPSIPIKNPK RNPIDAALKE PKPKIKKGRS SKAKGGGARK  120
NKNPNFHNND SSTEASGIPA PICSCTGAAR QCYRWGSGGW QSSCCTTNIS EYPLPMSATR  180
AGARTAGRKM SHGAYDKLLQ RLSAEGYDLE FPIDLKDHWA KHGTNKFVTI K
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851654.11e-173protein BASIC PENTACYSTEINE7-like
SwissprotO822863e-53BPC7_ARATH; Protein BASIC PENTACYSTEINE7
TrEMBLA0A0K9RZC61e-171A0A0K9RZC6_SPIOL; Uncharacterized protein
STRINGXP_010677416.11e-122(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.41e-45basic pentacysteine 7