PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_012320_pqko.t1
Common NameSOVF_012320
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 252aa    MW: 28654.2 Da    PI: 9.9319
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_012320_pqko.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.19.8e-114975127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                       ykt +Cr+f  +G C+yGd C FaH+p
  Sp_012320_pqko.t1 49 YKTGICRNFNISGRCNYGDFCIFAHVP 75
                       9************************86 PP
2zf-CCCH25.91.8e-08144167226
                        -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                        kt+lC++++    C yG++Ck+aHg
  Sp_012320_pqko.t1 144 KTRLCNNWMV-NCCAYGSKCKYAHG 167
                        9*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-104674IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-74777IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.844976IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-84975IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-55075IPR000571Zinc finger, CCCH-type
SMARTSM003563.288113IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.48488114IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-591116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-592115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-11141172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.07142169IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.67E-7142172IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4142168IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-6144167IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MNAPAFARQV TRPPFVPHFV PQRGTEYQPP TTNKLVTDNT PSKAVNSVYK TGICRNFNIS  60
GRCNYGDFCI FAHVPGKMRD SRMMNENTSG RRICKYSWEM CPYGKRCTFL HKKPEIYEEK  120
NNYNLPREKS VIMIQEEDVD SKTKTRLCNN WMVNCCAYGS KCKYAHGNAD LRRSVPALAS  180
KSGNTPIAPI SLVKNMLQNE AQKPSVLKQK LPSIAPRVCL FKKKKIKKLV GIYADWIGDE  240
SLVPCLASEY QQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859167.10.0zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A0K9RZD00.0A0A0K9RZD0_SPIOL; Uncharacterized protein
STRINGXP_010691178.18e-74(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-09C3H family protein