PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_013060_hufi.t1
Common NameSOVF_013060
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family DBB
Protein Properties Length: 320aa    MW: 35736.8 Da    PI: 5.7477
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_013060_hufi.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.43e-08443538
           zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                        C+ +++ke++ fC  ++  lC+ C ++ H+       H+
  Sp_013060_hufi.t1  4 QCDVCSKKEASVFCSADEAALCDVCDDKVHHAnklaskHQ 43
                       7****************************74446777776 PP
2zf-B_box26.41.4e-085593339
           zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
                        ++C+ ++e+++ lfC++++  lC++C l  H    Ht+
  Sp_013060_hufi.t1 55 FPVCDICQENRALLFCQQDRAILCRECDLPLHTAneHTR 93
                       589***************************995567875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.978147IPR000315B-box-type zinc finger
CDDcd000215.72E-6347No hitNo description
PfamPF006432.7E-6444IPR000315B-box-type zinc finger
SMARTSM003361.8E-8447IPR000315B-box-type zinc finger
SMARTSM003362.3E-1353100IPR000315B-box-type zinc finger
PROSITE profilePS5011910.11153100IPR000315B-box-type zinc finger
PfamPF006435.9E-75693IPR000315B-box-type zinc finger
CDDcd000211.47E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MKIQCDVCSK KEASVFCSAD EAALCDVCDD KVHHANKLAS KHQRFSLLHP SSSQFPVCDI  60
CQENRALLFC QQDRAILCRE CDLPLHTANE HTRKHNRFLL TGIKLSEVIS DNITISNGNG  120
CESGDTVPDF KCTKTPTSVF SEKTLNSAVT NSSNSNSTIS SNINQLNCGG STSNISEYLI  180
DMLPGWHFED FLVDSASPAP FGFCSKSGNN HDLEVNEDVL SFFDVENESD QFTCCPTQSE  240
SFWVPQATTL WNVFGQPSEI HHYKNGIKPQ QQQQQQQQQQ QEAPPSVTTM KVKRKYLKDD  300
AFTVPEINSS VGSKRTRPLW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021860907.10.0B-box zinc finger protein 20-like
TrEMBLA0A0K9RZ110.0A0A0K9RZ11_SPIOL; Uncharacterized protein
STRINGXP_010672311.11e-143(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-67salt tolerance homolog2