PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_013240_hjeo.t1
Common NameSOVF_013240
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRF
Protein Properties Length: 453aa    MW: 49190 Da    PI: 7.7216
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_013240_hjeo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC70.32.3e-22165209144
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgr.srsrkske 44 
                        d+ep+rCrRtDGKkWRCsr+v + +k+CErH h+gr srsrk++e
  Sp_013240_hjeo.t1 165 DPEPWRCRRTDGKKWRCSRDVAPEQKYCERHSHKGRpSRSRKPVE 209
                        79*********************************9557777766 PP
2QLQ49.71.1e-1796131237
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                        aFTa+Q q+L++Q  ++Ky++a++PvPpeLl +++k
  Sp_013240_hjeo.t1  96 AFTANQRQELERQTIIFKYMMASVPVPPELLIPLSK 131
                        8******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-995131IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.58996131IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088803.6E-1296129IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.785165210IPR014977WRC domain
PfamPF088795.0E-18166207IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MSTGNRTGYG NWEFDKPDVN NLDYCDVGLG LKIPWQQQQQ QQQQQPQQPQ QQQSALSWLH  60
NRQPQNHPEN NSRSPSPTIS GFSLASRFGN GGGRVAFTAN QRQELERQTI IFKYMMASVP  120
VPPELLIPLS KYPTSAITNS SSSSVGRKTG LELRYAAGGR GGGGDPEPWR CRRTDGKKWR  180
CSRDVAPEQK YCERHSHKGR PSRSRKPVES PLLSSSSTLT GSTTPSVSSS CNPVLFSPYT  240
IPKPSSHSFD LPSHTPSQFN PFARYPDWFT KKEVAAPTAV TATACLYPQQ IGGGGGGGGG  300
GGGDETTRTH VLEDHHHQQH QSCLLPRPFI DAWSLSDHVD PKDATTTNPS SIDNNLPLTL  360
SMSPGIDHDH HHHHNSDDNN NTKDNAEVRS SSSSSHHPFN WMNSWIGSPT APGGPLAEAL  420
CLGISGSGNG LMSSHSDELV SPHGHSTSSS TTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157163GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855506.10.0growth-regulating factor 2-like
TrEMBLA0A0K9RZ300.0A0A0K9RZ30_SPIOL; Uncharacterized protein
STRINGXP_010676918.11e-157(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24150.12e-31growth-regulating factor 8