PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_013360_axec.t1
Common NameSOVF_013360
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 71aa    MW: 8428.46 Da    PI: 8.9397
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_013360_axec.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.17.2e-12652448
                       S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48
                       WT+   + + +a  ++ ++   +W+ Ia+++g g+t +++k r+q++l
  Sp_013360_axec.t1  6 WTPKQNKAFERALDKYDKDtpdRWNNIAKEVG-GKTVEEVKKRYQDLL 52
                       ********************************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.581156IPR017884SANT domain
SMARTSM007171.3E-9254IPR001005SANT/Myb domain
SuperFamilySSF466892.66E-14460IPR009057Homeodomain-like
PfamPF002493.9E-10552IPR001005SANT/Myb domain
CDDcd001676.35E-8652No hitNo description
Gene3DG3DSA:1.10.10.605.1E-7653IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MSSNGWTPKQ NKAFERALDK YDKDTPDRWN NIAKEVGGKT VEEVKKRYQD LLEDIQHIES  60
GRVPFPYNWK M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-26266771RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690880.14e-31PREDICTED: protein RADIALIS-like 2
RefseqXP_019107549.14e-31PREDICTED: protein RADIALIS-like 2
SwissprotQ1A1733e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A0K9S0L15e-46A0A0K9S0L1_SPIOL; Uncharacterized protein
STRINGXP_010690880.12e-30(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.15e-29RAD-like 6