PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_013380_yujy.t2
Common NameSOVF_013380
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YB
Protein Properties Length: 160aa    MW: 17714 Da    PI: 4.3137
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_013380_yujy.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB76.73.4e-241296387
              NF-YB  3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvyl 87
                       ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se++d c+re+++ti+++ +l al  lGf +y+e++ +  
  Sp_013380_yujy.t2 12 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNREEKRTIAPEHVLKALEVLGFGEYIEEVYAAY 96
                       6899***************************************************************************986544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.7E-389144IPR009072Histone-fold
SuperFamilySSF471132.68E-3413146IPR009072Histone-fold
PfamPF008082.0E-211580IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MMEPMDIVGK AKEDASLPKA TMTKIIKEML PPDVRVARDA QDLLIECCVE FINLVSSESN  60
DVCNREEKRT IAPEHVLKAL EVLGFGEYIE EVYAAYEQHK VETMQDGVRG GGGGKWGNAA  120
EMTEEEAAAE QQRMFAEARA RMNGNVPLPK QSDTDPNPES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B5e-341313912133Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844004.11e-116protein Dr1 homolog isoform X1
SwissprotP495923e-90NC2B_ARATH; Protein Dr1 homolog
TrEMBLA0A0K9S0S81e-115A0A0K9S0S8_SPIOL; Uncharacterized protein
STRINGXP_010669512.18e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.22e-71nuclear factor Y, subunit B13
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]