PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_013490_odcy.t1
Common NameSOVF_013490
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YC
Protein Properties Length: 149aa    MW: 16763.1 Da    PI: 6.0234
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_013490_odcy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC537.7e-177941197
              NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97
                       +++ d  + +lP+ r+kki+k+d+d+++is+ea  l+s a elf+  l+ +s   a ++kr+ +k   i +av+r + + dfl+d  p
  Sp_013490_odcy.t1  7 NTSIDTPQLSLPVGRVKKIVKFDKDITRISSEALFLVSGATELFLQLLAEKSAEIAADKKRKIIKLEHIRTAVKRHQpTSDFLLDSLP 94
                       4455777999***************************************************************9976489*****987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471138.53E-20896IPR009072Histone-fold
PfamPF008081.5E-181679IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-201794IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MAEEEENTSI DTPQLSLPVG RVKKIVKFDK DITRISSEAL FLVSGATELF LQLLAEKSAE  60
IAADKKRKII KLEHIRTAVK RHQPTSDFLL DSLPLPPSSH PTDHPVADHT VKERSVLPPN  120
TRRIDSIFRK PPPQNDDLRT EAPVDEDET
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853559.11e-102nuclear transcription factor Y subunit C-8
TrEMBLA0A0K9RYT11e-101A0A0K9RYT1_SPIOL; Uncharacterized protein
STRINGXP_010682780.17e-55(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.12e-27nuclear factor Y, subunit C13