PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_016100_hgze.t1
Common NameSOVF_016100
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LBD
Protein Properties Length: 277aa    MW: 30745.9 Da    PI: 9.5551
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_016100_hgze.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260112.82.3e-35441441101
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        aCaaC+++rrkCa++C+lapyfpa++ ++f n+ k+FG+++++k l ++ ++ r+dam+sl+y A+ara+dPv G+ ++i +lq q+   ++
  Sp_016100_hgze.t1  44 ACAACRFQRRKCAENCPLAPYFPAHNYQQFINAYKIFGVNKIVKALISVGPTFRDDAMTSLIYSANARAQDPVGGCKQIIDSLQAQITFYEN 135
                        7******************************************************************************************* PP

             DUF260  93 elallkeel 101
                        +l+++++++
  Sp_016100_hgze.t1 136 QLNAIRAQI 144
                        ***999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.10243144IPR004883Lateral organ boundaries, LOB
PfamPF031957.9E-3344141IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MNNNIKNPNT PSHTPPLTTA TSTPLPSDEN CPTDDPLSSN STNACAACRF QRRKCAENCP  60
LAPYFPAHNY QQFINAYKIF GVNKIVKALI SVGPTFRDDA MTSLIYSANA RAQDPVGGCK  120
QIIDSLQAQI TFYENQLNAI RAQIAAFRAG ASTGFPPFFR GAHVQVPEAL PLSSPAHFRK  180
RPGNVLEDIK PIPKLSNKAK KAVAQFETEN MITGNQVQNV AVRVEHKLED ETENLSDEQK  240
PTKRKSVDKF GKRKKKRIKH SSLDDHLPCY NTFCYPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-25361563123LOB family transfactor Ramosa2.1
5ly0_B1e-25361563123LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242256KRKSVDKFGKRKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853962.10.0LOB domain-containing protein 22-like
TrEMBLA0A0K9RXX50.0A0A0K9RXX5_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.18e-35LOB domain-containing protein 22