PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_017880_swyz.t1
Common NameSOVF_017880
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family M-type_MADS
Protein Properties Length: 380aa    MW: 42793.9 Da    PI: 7.226
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_017880_swyz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.23.8e-17948140
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                       ++i+ +  r++t++kR++g+lKK +E S+LC++ v++ii+
  Sp_017880_swyz.t1  9 EFISKEKLRNTTYAKRKKGLLKKGHEFSILCNVPVCIIIY 48
                       58999**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.88E-16159IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-14161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.605148IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-8323IPR002100Transcription factor, MADS-box
PfamPF003193.2E-141049IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-82338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-83859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGRAKIAMEF ISKEKLRNTT YAKRKKGLLK KGHEFSILCN VPVCIIIYPY NEGKKKKQST  60
EQPEVYSFKG DSLDLGRATD PNIAKEIIDR YLSVPNDEKF KRSLNLYDMV DDWKRKEEQE  120
LLKLRQKNGL ISKYPNPYPS WDSRFDGLTS DQLVEFLAHL DSKIEFVRQR IALIKSNSSS  180
NNNISNDVDV DVDVEKAGLL VPYYDHEPTQ SPSPSPIPTP TPISSVMSGH QIMGGYPYIE  240
GYNQLYSSYN YPINNSNNYY YNNQQYCHQL VPFNYPNNDH YYQGGVATLM GDDHDGGGGG  300
GGGGGKGSNL MYNMNTMYYD QGRGIVDNVG AATSSYGAGL PMQSLPMLQP NASLSMQRQY  360
QMFYNSTSRY ACEGSTSSHI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11225KEKLRNTTYAKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021751881.11e-126agamous-like MADS-box protein AGL11
TrEMBLA0A0K9RZ430.0A0A0K9RZ43_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.22e-14AGAMOUS-like 87