PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_019240_hqpd.t1
Common NameSOVF_019240
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 391aa    MW: 45970.3 Da    PI: 6.4667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_019240_hqpd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05162181120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        ++C++C+k+F+r  n++ H+
  Sp_019240_hqpd.t1 162 FSCSICSKTFNRYNNMQMHM 181
                        89*****************9 PP
2zf-C2H212.70.00038246268123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +C+k F  k + ++H +++
  Sp_019240_hqpd.t1 246 FMCRKCSKAFAVKGDWRTHEKNC 268
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.17E-5153185No hitNo description
PROSITE profilePS5015710.783162189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-5162181IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.13162184IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
SMARTSM00355240209241IPR015880Zinc finger, C2H2-like
SMARTSM0035573246266IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MLMMKLPLFY KQHQDEEDEG EVDGEMTLPL LSRLSEAKAI KEEEGEGYNE ESDDHEEENN  60
VMVALHIGLP NSSSSNSIIT INDHDQELSN RSFIDDDDDL VESKNLKLEE EEKDQSLLMM  120
INDDHKEKIN MFDHHYSSSS FNTESRFWIP TTSQILIGPM QFSCSICSKT FNRYNNMQMH  180
MWGHGSEYRK GPESLRGTQP AAMLRLPCYC CAQGCKNNIN HPRAKPLKDF RTLQTHFKRK  240
HGIKGFMCRK CSKAFAVKGD WRTHEKNCGK LWYCTCGSDF KHKRSLKDHI KSFGKGHSPH  300
PSLERLRRSP PRRSPRRRRT PPPPRKIRLR RSQRPARRRE EKKAVAAEKG CREEARGEEE  360
GRRWRQEEEE EEEQEEEEEE EEEEEETQEE R
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863914.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-108ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0K9RYT40.0A0A0K9RYT4_SPIOL; Uncharacterized protein
STRINGXP_010686027.11e-168(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-100C2H2 family protein
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]