PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_019710_jnni.t1
Common NameSOVF_019710
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 650aa    MW: 70238.2 Da    PI: 8.2162
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_019710_jnni.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.3e-094704932347
                        -HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  23 tWktIartmgkgRtlkqcksrwqky 47 
                        +W++Ia++++ gRt++++k++w+++
  Sp_019710_jnni.t1 470 RWAAIAARLP-GRTDNDVKNHWNSH 493
                        7*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142447.7E-152874IPR029472Gag-polypeptide of LTR copia-type
PROSITE profilePS500906.562463494IPR017877Myb-like domain
CDDcd001674.50E-6470494No hitNo description
Gene3DG3DSA:1.10.10.602.4E-10470494IPR009057Homeodomain-like
SuperFamilySSF466892.34E-7470502IPR009057Homeodomain-like
PfamPF002494.1E-7470493IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MVDSEDPKNK TSGSIVPRYE PFTEYYLHPS EGTGTVISPI LLKNNNYEEW SSSLRNNLRA  60
KNKLGFIDGT IAVPDATSPD YVHWGIVNSM LVAWIFNTLD ESIRSTMILP LLAKTLWDEL  120
RVTYSIGNGP RILELKHAIS DCKQRGRSVT VYYGELNKSH NDLSSYFKLP VCSCSAAAEY  180
ARLQDASMLH QVCIGLDSRK FGSVVSTLLM MDPLPSLNVA YAKVVSDERK QTVSEASEAS  240
QTGVVSFSTS GIASGRDENV STEPRVCSHY GAKGHLKERL YELIGWPDKR PGGRGRRGRG  300
GGRGTGGGRG AANFAGVADG GHVSGSSDIG ASDRSSVPTL SDAHNNTSQG HLASSDNTSQ  360
GKVPAVQVYT RRPRQSGQAS VHVPTGAGTA ASTHAVPNNA AAMSSTVPNQ AAASTSQVPH  420
NVATPTLSSC VDISKGIVPS SPSSFVRIGE FECDASTPLS LRGSPIDNVR WAAIAARLPG  480
RTDNDVKNHW NSHFKKYQTN NNDSKTTQSA ESRIARHMVQ WESIRLEAEA RLSLQARHYP  540
SGFPRPNSDN FLPLWNSEVG QSFRKVPKEQ APVMGWASAS PEACSGITGQ VWQPLSVKKE  600
QFSGVTDQVW QPVSVKKEQL QQQWAYSGSP ESGESSDTAM NMLLDSPVSE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293303RGRRGRGGGRG
2300307GGRGTGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9RWL70.0A0A0K9RWL7_SPIOL; Uncharacterized protein
STRINGXP_010693675.11e-126(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.13e-25myb domain protein 17