PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_020000_tejy.t1
Common NameSOVF_020000
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 299aa    MW: 34397.6 Da    PI: 8.0254
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_020000_tejy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.45.2e-1537124186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W+++ ++aL+ea  + + +l+rg+l++++W ev++ +   g   +r+ +qCk++++ l+k+yk +k + ++ + + +s +p+f++l+
  Sp_020000_tejy.t1  37 CWSEDATHALVEAWGSHHLALNRGNLRQHHWLEVAATVNTIGDrrRRTDIQCKNRIDTLKKKYKIEKSRTIDPSGTYVSPWPFFSRLD 124
                        7*************************************8888733569************************999999*******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-2235124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MATNVDDSSP FPALRKLRHQ PLAATLTRAS PVLREDCWSE DATHALVEAW GSHHLALNRG  60
NLRQHHWLEV AATVNTIGDR RRRTDIQCKN RIDTLKKKYK IEKSRTIDPS GTYVSPWPFF  120
SRLDYLISGD GEKLHSSRKI SPDTPSTATA LTNFPVAPRS ALIRKRPVPV DDSFFRRQFA  180
AVVAAAAEME EREDEEEERE SSERTGTSSD GGRRDRREKE EEGGCNNGCR HLAEAIMRFG  240
EVYERVETVK QEQLIELEKH RMQFTKDLEY QRMKLFMDTQ LQLARIKRSK HSDDADSYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842554.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A0K9RWV00.0A0A0K9RWV0_SPIOL; Uncharacterized protein
STRINGXP_010689829.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-37sequence-specific DNA binding transcription factors