PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_020420_jnzx.t1

Common Name

SOVF_020420

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 276aa MW: 31973 Da PI: 10.2645

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_020420_jnzx.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.5	4.4e-17	3	91	7	97
.-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 7 psdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ps v + l +pk++++++ +++ + + l++ + ++Wev + +s ++ l++GWk F+ +n+L++gD++vF+l++++ef +v+vf Sp_020420_jnzx.t1 3 PSFVEHNYSLGIPKEYVKRYlNKERPFNHAFNLQTdDTRKTWEVVI--VANSTHVKLREGWKCFALDNKLNVGDVCVFELINKHEF--KVRVF 91 5667778889********7444445556666663566***..9******************************98888..77776 PP
2	B3	57.2	3e-18	156	253	1	98
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f++++ ps v + r+++pk+f +++ ++ + +++ +l++ +g ++W v++ + ++r l+ GWk+F+ +n+Lk+ D++vF+l++++ Sp_020420_jnzx.t1 156 FVTKMQPSFVEYHFRVSIPKEFGKKYlhkKNGHLIDRKFSLKTNTGrKTWPVTI--GGIDQRARLKVGWKKFAIENKLKVDDICVFELINKQ 245 889999******************8763334477899999988879**..******************************9877 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 ef v+++r Sp_020420_jnzx.t1 246 EF--QVGILR 253 77..999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	12.957	1	94	IPR003340	B3 DNA binding domain
SMART	SM01019	2.0E-15	1	94	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.5E-19	1	92	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.65E-19	1	92	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.75E-17	1	91	No hit	No description
Pfam	PF02362	1.6E-14	3	91	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	1.3E-23	150	253	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-22	151	254	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.57E-18	154	253	No hit	No description
SMART	SM01019	2.6E-16	156	255	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.0E-15	156	253	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.548	156	255	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MQPSFVEHNY SLGIPKEYVK RYLNKERPFN HAFNLQTDDT RKTWEVVIVA NSTHVKLREG 60 WKCFALDNKL NVGDVCVFEL INKHEFKVRV FGVVNDMGKV EADEVKGVLT NVTQARVQTS 120 MDDKVILARG CSLTPEEDKR VRAYASQCKK SKNPLFVTKM QPSFVEYHFR VSIPKEFGKK 180 YLHKKNGHLI DRKFSLKTNT GRKTWPVTIG GIDQRARLKV GWKKFAIENK LKVDDICVFE 240 LINKQEFQVG ILRVGNAKEN RRESDNHIIK TELMNS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021847789.1	0.0	B3 domain-containing protein LOC_Os12g40080-like
TrEMBL	A0A0K9RWT2	0.0	A0A0K9RWT2_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31650.1	1e-13	B3 family protein