PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_021550_mfzg.t1
Common NameSOVF_021550
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 244aa    MW: 26971.3 Da    PI: 8.0979
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_021550_mfzg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-194291255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f +ae Aa a+++a++k++g
  Sp_021550_mfzg.t1 42 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFESAEAAAIAYDEAALKFKG 91
                       7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.0E-3241100IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-2242100IPR016177DNA-binding domain
CDDcd000182.62E-2142100No hitNo description
SMARTSM003802.0E-3742105IPR001471AP2/ERF domain
PROSITE profilePS5103224.6714299IPR001471AP2/ERF domain
PfamPF008479.3E-134291IPR001471AP2/ERF domain
PRINTSPR003678.6E-144354IPR001471AP2/ERF domain
PRINTSPR003678.6E-1481101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MVSALAQVMA SDSSQLDNIN MSQQQSEDQP AATATVGGKK RHYRGVRQRP WGKWAAEIRD  60
PKKAARVWLG TFESAEAAAI AYDEAALKFK GTKAKLNFPE RVIHAHRQNH NHNHNHNHNH  120
NHNQNHYHYH NQTSETTAAA AAAATATRAT VDDTTSNNTY PHLVQYAQLL SSNEVNFSNF  180
MTSLYPETTI SNYSSTTLAS QPSPSSSAAN QATPRYEEWD FQSFSTTISN TNSSSTRPQP  240
DAGI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2641102163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845984.10.0ethylene-responsive transcription factor ERF113
TrEMBLA0A0K9RXT71e-180A0A0K9RXT7_SPIOL; Uncharacterized protein
STRINGXP_007139323.13e-48(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.19e-33ERF family protein