PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_021610_powa.t1
Common NameSOVF_021610
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 475aa    MW: 52634.8 Da    PI: 4.8743
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_021610_powa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix82.84.6e-2652153186
           trihelix   1 rWtkqevlaLiearremeerlrrgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 
                        rWt+qe+l+Li+++r  e+r+rrg+                + +p+W+ vs++++++g++r+p+qC+++w+nl++++kkike++++ ++es 
  Sp_021610_powa.t1  52 RWTRQEILVLIQGKRVAENRVRRGRsaavcegegqqqqqqqQVEPKWATVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWDSQIKDESD 143
                        8*********************996677788888888888789********************************************99999 PP

           trihelix  77 stcpyfdqle 86 
                        s + + ++l+
  Sp_021610_powa.t1 144 SFWLMRNDLR 153
                        9998888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.05152125IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.4E-552124IPR009057Homeodomain-like
PfamPF138372.6E-1052148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MAEQLLRHSV NNDDDDDDVV TLSVTPPKAN DVDEGGGGGG GGGGGKAARL PRWTRQEILV  60
LIQGKRVAEN RVRRGRSAAV CEGEGQQQQQ QQQVEPKWAT VSSYCKRHGV NRGPVQCRKR  120
WSNLAGDFKK IKEWDSQIKD ESDSFWLMRN DLRREKKLPG FFDKEVFDIL NSNNNNNNNN  180
SSDHLNLEGD ETLFDSGRTA AADDALFAEE IDTPISISPN KEVELIVDNS MKLEIDNPPL  240
PLPLPLPLPL PLPLPLPLPL PLLSTTIPTT PIPATTPIPA PTPISEKQYQ PQTAEATAPG  300
TSNDEKVNIE IGSTSHEGRK RRRFMEEEED DDVGEGKGEG EGEREGEGGR FQQDELTQVL  360
ERNGRILSAQ FDAYNINLKL DREERKDHAT SLVAVLDNFP LKQGNPRSLN LAATVVGSLV  420
TDFKVAGETA QQFIGSSTLY STVVQPEEKR KKEPSFRPRK LSLLLVCRSS YRGFM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318322RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845976.10.0trihelix transcription factor ASR3-like
TrEMBLA0A0K9RW210.0A0A0K9RW21_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-68Trihelix family protein