PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_023190_qsoe.t1
Common NameSOVF_023190
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 220aa    MW: 25070.4 Da    PI: 8.6487
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_023190_qsoe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.79e-21655255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a++k++g
  Sp_023190_qsoe.t1  6 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAESAALAYDEAALKFKG 55
                       7********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-33564IPR001471AP2/ERF domain
CDDcd000184.73E-34664No hitNo description
PfamPF008471.1E-14655IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-22664IPR016177DNA-binding domain
SMARTSM003802.3E-38669IPR001471AP2/ERF domain
PROSITE profilePS5103224.869663IPR001471AP2/ERF domain
PRINTSPR003678.0E-12718IPR001471AP2/ERF domain
PRINTSPR003678.0E-122945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
DVRKRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFDTAE SAALAYDEAA LKFKGNKAKL  60
NFPERVQGKL TDSGFYMIPA SSSSALQQPP PPPPQHQIPN NYPYPLHYQT PNNNYNYNNY  120
NNYMMMTSSA IPFNNIQNHQ TQHGDHHSSF HYNNSQQYEA ITPPSYNVSE SSSASYGGED  180
HSSSFATIKM ETLNPDELQQ QHDQHLFFST SSLRGRGNSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-27566163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844726.11e-164ethylene-responsive transcription factor ERF114
TrEMBLA0A0K9RVM41e-163A0A0K9RVM4_SPIOL; Uncharacterized protein (Fragment)
STRINGEMJ251386e-44(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.18e-32related to AP2 6l