PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_023380_jnpe.t1
Common NameSOVF_023380
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 263aa    MW: 28418.7 Da    PI: 7.1948
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_023380_jnpe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.4e-183787155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ykGVr ++ +g+Wv+eIr p   ++++r++lg++ t+e Aa+a++aa ++l+g
  Sp_023380_jnpe.t1 37 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTPEAAARAYDAALLCLKG 87
                       59*****998.**********9...336************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.91E-213797No hitNo description
SMARTSM003801.9E-3638101IPR001471AP2/ERF domain
PROSITE profilePS5103221.6943895IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-203897IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.3E-303897IPR001471AP2/ERF domain
PfamPF008471.7E-113887IPR001471AP2/ERF domain
PRINTSPR003671.9E-83950IPR001471AP2/ERF domain
PRINTSPR003671.9E-86177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0034605Biological Processcellular response to heat
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071497Biological Processcellular response to freezing
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MVKSELKKTE SEAAKPMSSS SSSLSSSLSL SSSSLKKKYK GVRMRSWGSW VSEIRAPNQK  60
TRIWLGSYST PEAAARAYDA ALLCLKGSSA NLNFPHSSYS TTCPLIPSSN NHTTTTTTTT  120
TTVTTVMSPK SIQRVAAAAA AAAATTSTTT TFTDQFHHCS SSSSISPSPS MSSSPSLSSS  180
SPPLGQITDD LISLTHPYPS FNADINNALM MNNNEEDPWS WFDVSPKHVD LMLNSMFFNP  240
PSLNIMDIEQ LHDDGDIPLW SFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1538971474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00156DAPTransfer from AT1G21910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021855735.10.0ethylene-responsive transcription factor ERF014-like
TrEMBLA0A0K9RXR20.0A0A0K9RXR2_SPIOL; Uncharacterized protein
STRINGXP_010670581.12e-57(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.15e-32ERF family protein