PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_023860_tzud.t1
Common NameSOVF_023860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 202aa    MW: 23829 Da    PI: 4.2203
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_023860_tzud.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-135396146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                       r+rWT+++ el+++a  q+G++ ++ I + ++ gRt++q++ ++ +
  Sp_023860_tzud.t1 53 RMRWTKQDTELFYKALSQFGPN-FSMIQQLFP-GRTRNQIRYKYKN 96
                       89******************77.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.1E-2246128No hitNo description
PROSITE profilePS512949.16648102IPR017930Myb domain
SMARTSM007172.9E-952100IPR001005SANT/Myb domain
SuperFamilySSF466894.19E-115395IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-95396IPR009057Homeodomain-like
CDDcd001672.49E-95596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
IEDLPPEDPP YYDDNETYGY DQDGETFDNP STFEVQKDTG YFNYHSFMTK EPRMRWTKQD  60
TELFYKALSQ FGPNFSMIQQ LFPGRTRNQI RYKYKNEDPL RLHDALTSRT QDLSYFKLVI  120
KRLEEQAAQD AKMDKDDSVC ITGEEEGPEE VLNTYDDVVN SKQKEEGGAA DQEPNKRQVE  180
RPPKSYYSEE EEIDWSSYKS EL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021858360.11e-144uncharacterized protein LOC110797543
TrEMBLA0A0K9RXB81e-147A0A0K9RXB8_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010671339.11e-76(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.15e-27MYB_related family protein