PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_024640_csri.t1
Common NameSOVF_024640
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LBD
Protein Properties Length: 220aa    MW: 23661.8 Da    PI: 4.9621
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_024640_csri.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.42.1e-42481471100
             DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                        +CaaCk+lrr+Ca++Cvlapyfp ++p kf ++hk+FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a
  Sp_024640_csri.t1  48 PCAACKILRRRCADKCVLAPYFPPTDPLKFSIAHKVFGASNIIKLLQELPESQRADAVSSMVYEANARLRDPVYGCAGAICQLQKQVSELQA 139
                        7******************************************************************************************* PP

             DUF260  93 elallkee 100
                        ela+ ++e
  Sp_024640_csri.t1 140 ELAKSRAE 147
                        ***98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.18147148IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-4248144IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEGSSSDVVM SPVGAASPCS TGSPNSPPPC SGHGHQASYG GPPVIMSPCA ACKILRRRCA  60
DKCVLAPYFP PTDPLKFSIA HKVFGASNII KLLQELPESQ RADAVSSMVY EANARLRDPV  120
YGCAGAICQL QKQVSELQAE LAKSRAEVVN MQCQQANLLA IICMEMTQSS SQDVVMPTTS  180
SSPPPQDPSS YETSPINSYL SFYEDNNNLS SIWDREPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-434715510118LOB family transfactor Ramosa2.1
5ly0_B5e-434715510118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861367.11e-162LOB domain-containing protein 1-like
SwissprotQ9LQR08e-72LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A0K9RV841e-161A0A0K9RV84_SPIOL; Uncharacterized protein
STRINGXP_010669677.17e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.13e-72LOB domain-containing protein 1