PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_024670_sfen.t1
Common NameSOVF_024670
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 284aa    MW: 31248.1 Da    PI: 6.1476
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_024670_sfen.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1793141355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr ++ +g+Wv+eIr+p++   + r++lg++ ta++Aa+a++ a+++++g
  Sp_024670_sfen.t1  93 YRGVRKRS-WGKWVSEIREPKK---KSRIWLGTYPTAQMAARAHDVAALAIKG 141
                        9****888.**********854...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.2E-3492155IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2092150IPR016177DNA-binding domain
PROSITE profilePS5103223.53892149IPR001471AP2/ERF domain
PfamPF008477.2E-1293141IPR001471AP2/ERF domain
PRINTSPR003673.8E-1093104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-3193150IPR001471AP2/ERF domain
CDDcd000187.65E-3193151No hitNo description
PRINTSPR003673.8E-10115131IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MEPQNQTLDI FFHSLSKSSS ITSTTTTTTT TTSTSSSSVS SSPFLGVDKK CKGSKRVRLD  60
PNENNNNNDN HNNDDHDHDD DGNNQKDGHD LMYRGVRKRS WGKWVSEIRE PKKKSRIWLG  120
TYPTAQMAAR AHDVAALAIK GDNAFLNFPA LAHLLPRPAS TCPKDIQAAA AKAAEAELIS  180
CPAAASSSSS CSTNVSSSSS EESNVEWSSS VGPTRVHDDH HHHHHHHNVV DDDESLFDLP  240
DLVIEDKTQR IGGYFSHSTW QLAQGEPMIF GLDDDQQLNC LWMG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-1793149360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893194e-48AC189319.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB036H01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861331.10.0ethylene-responsive transcription factor ERF043-like
RefseqXP_021861342.10.0ethylene-responsive transcription factor ERF043-like
SwissprotQ8LBQ71e-43ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0K9RV340.0A0A0K9RV34_SPIOL; Uncharacterized protein
STRINGXP_010692104.11e-81(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60490.18e-40ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]