PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_024820_ycrm.t1
Common NameSOVF_024820
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LBD
Protein Properties Length: 241aa    MW: 27104.4 Da    PI: 4.0524
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_024820_ycrm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26031.64.6e-101415898
             DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallk 98
                       mss++y+A++r r Pv G+v+vi+ l++q++q ++el +++
  Sp_024820_ycrm.t1  1 MSSIIYQANVRDRFPVFGCVEVIQLLKNQIHQCEQELLSVH 41
                       89*********************************998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031952.2E-7140IPR004883Lateral organ boundaries, LOB
PROSITE profilePS508918.55144IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MSSIIYQANV RDRFPVFGCV EVIQLLKNQI HQCEQELLSV HSILNLYRNQ HEQQQPVSSN  60
GVPFTDFNAA SQLQLGMAPP INNDLSCYPL NTLVHEQQYN SDNMVPVSQN HSYSSSSSPY  120
NSGYFDVKET VLNSMWIQQQ GGDDNNNSSD NDNGNVMPIQ SQLVVTSEST ANQQDAFQDY  180
NDMHPYFDTV DDRQSYIDSK ETYDSSPESS AKDITQFTVT EHVGENELKT AAAYFSLTSV  240
N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866221.11e-177LOB domain-containing protein 27-like
TrEMBLA0A0K9RV761e-177A0A0K9RV76_SPIOL; Uncharacterized protein
STRINGXP_010678608.11e-100(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.12e-08LOB domain-containing protein 27