PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_025040_ugmt.t1
Common NameSOVF_025040
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 311aa    MW: 33922.9 Da    PI: 9.0608
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_025040_ugmt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-20112161255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++ a+++++g
  Sp_025040_ugmt.t1 112 KYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEAAARAYDDAALRFRG 161
                        8********.**********76....35************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.6E-33111170IPR001471AP2/ERF domain
CDDcd000182.49E-23112171No hitNo description
PfamPF008471.4E-13112161IPR001471AP2/ERF domain
PROSITE profilePS5103225.659112169IPR001471AP2/ERF domain
SMARTSM003805.9E-38112175IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23112170IPR016177DNA-binding domain
PRINTSPR003676.9E-12113124IPR001471AP2/ERF domain
PRINTSPR003676.9E-12135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MHEMVSALTH VVSGASSSSS SLLSSSSSFG VKRRHDDQEH GHGIFSDVKP VSSPYPYLLK  60
GGPSFVTSTS TTKTKTRATS TITYTHHNSI KHEAINVAPQ PPQVGGEPTR RKYRGVRQRP  120
WGKWAAEIRD PYKAARVWLG TFDTAEAAAR AYDDAALRFR GSKAKLNFPE NVTFQDIPAN  180
IPPTQLSFSG SPAPLLAAPR NSNQSIQNQP LGYMQMQELE EYKDYIDYSR IISGNFDSNE  240
GELSYLDEMM MSSSLSSPPL LPPTTSMGGS SVSLPSSSMS TPPLTYFTAE IPPRGSQKKM  300
DESKDASFGS T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-24111172163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854895.11e-173ethylene-responsive transcription factor ERF110-like
TrEMBLA0A0K9RX280.0A0A0K9RX28_SPIOL; Uncharacterized protein
STRINGXP_010680295.13e-98(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.16e-28related to AP2 6