PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_025540_jfmu.t1
Common NameSOVF_025540
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family M-type_MADS
Protein Properties Length: 222aa    MW: 24677.2 Da    PI: 9.9865
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_025540_jfmu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF725.1e-231865249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       r e ksn qvtfskRr+g++KKA+EL++LC+a+va+i+fs+  k y +
  Sp_025540_jfmu.t1 18 RMEKKSNCQVTFSKRRTGLFKKASELCTLCGAQVAIIVFSPGKKAYSF 65
                       6799*************************************9998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.731969IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-29968IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-261079IPR002100Transcription factor, MADS-box
CDDcd002652.60E-311083No hitNo description
PRINTSPR004044.3E-181131IPR002100Transcription factor, MADS-box
PfamPF003192.7E-241865IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-183146IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-184667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009960Biological Processendosperm development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MSTSEKKTRG RQKVKMVRME KKSNCQVTFS KRRTGLFKKA SELCTLCGAQ VAIIVFSPGK  60
KAYSFGHPSV ETVINRFLLS KSSPKSEPNW DSDSLVEAQQ GASASASAGA SVGDGASASA  120
SVRDLTIELA TINYQIDLEM KKSEALNKIK KRNEEHGHWW DQPAEKLTLQ QLVHLKATYE  180
VLKKNIIQHS ENLKMLGAPN APIQYAMFDA NGVFIGYRQD YY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863607.11e-167agamous-like MADS-box protein AGL62
TrEMBLA0A0K9RWQ01e-165A0A0K9RWQ0_SPIOL; Uncharacterized protein
STRINGXP_010690727.12e-64(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-48AGAMOUS-like 62