PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_025860_onex.t2
Common NameSOVF_025860
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 106aa    MW: 11956.5 Da    PI: 9.573
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_025860_onex.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.4e-116284527
                       --SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                        C++f+rtG+C+yGd+Ck+ H++
  Sp_025860_onex.t2 62 VCNRFLRTGFCPYGDSCKYRHPK 84
                       6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004517.7E-5338IPR003604Zinc finger, U1-type
SuperFamilySSF576672.04E-14443No hitNo description
PfamPF062208.0E-9539IPR013085Zinc finger, U1-C type
PROSITE profilePS5010315.2445785IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-85987IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-65984IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-96284IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-86288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MTVGKYHCDY CDKEFKDTPA ARRRHLQGIQ HHRNRKLWYD SLSLPQDPTG IPAVAQTFGN  60
GVCNRFLRTG FCPYGDSCKY RHPKHNLQGP VTQGQGTSVS LNGLLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836091.13e-69zinc finger CCCH domain-containing protein 3
RefseqXP_021836092.13e-69zinc finger CCCH domain-containing protein 3
SwissprotQ0JP118e-25C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A0K9RWV12e-74A0A0K9RWV1_SPIOL; Uncharacterized protein
STRINGXP_010674530.12e-47(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.11e-27C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]