PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_025870_qihe.t1
Common NameSOVF_025870
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 229aa    MW: 25865.7 Da    PI: 9.6459
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_025870_qihe.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.5e-12134209485
                        E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         ++ps+v+   +l lp  f+++   + +++ +++l de+  ++ v +  rk++    l++GWk+F++ ++L +gD vvF++ 
  Sp_025870_qihe.t1 134 PMLPSHVTGGFWLGLPSWFCRKSL-P-RNDGMVRLVDEDEIEYPVVYLARKCG----LSGGWKGFAECHQLVDGDAVVFQVL 209
                        6899****************8883.3.34559***************555555....**********************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-17127221IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-13128220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.12E-18129206No hitNo description
SMARTSM010192.0E-10131222IPR003340B3 DNA binding domain
PROSITE profilePS508639.714131222IPR003340B3 DNA binding domain
PfamPF023621.1E-10134210IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGIGTTSYEK SREKRVEENK KRLDDLNLIH LSQALKNLSP KPTPMKKASK PRIMDKQIIQ  60
VRRSPRVANN PAPVYAEISL PRFSSPRKNY GVVKARDFSN RVIASDDVRE YTIEEAEKLN  120
AKLEEEGFPT LVRPMLPSHV TGGFWLGLPS WFCRKSLPRN DGMVRLVDED EIEYPVVYLA  180
RKCGLSGGWK GFAECHQLVD GDAVVFQVLS HSIIKAYIIR GSSYDSGTD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836085.11e-169B3 domain-containing protein Os06g0194400-like
TrEMBLA0A0K9RV241e-169A0A0K9RV24_SPIOL; Uncharacterized protein
STRINGXP_010667517.11e-131(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-56B3 family protein