PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_026020_gcng.t1
Common NameSOVF_026020
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 244aa    MW: 27748.5 Da    PI: 8.6038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_026020_gcng.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.7e-135196454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +h ++E+rRRdriN  +++Lr+l+Pk+     +K++Ka+ Le++ve +k+L
  Sp_026020_gcng.t1 51 NHRQAEKRRRDRINGQLARLRRLIPKS-----EKMDKAALLERVVEQVKDL 96
                       799***********************8.....8*************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.0274796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-135099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.16E-1250105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.1E-115196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-105199No hitNo description
SMARTSM003533.2E-1053102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00167149200No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MPHHFNATNT TSSSMHLQEL PANCYALEFQ EPFEGFAEFE DKASAADSSH NHRQAEKRRR  60
DRINGQLARL RRLIPKSEKM DKAALLERVV EQVKDLKRKA SEISKIFTIP SEIDDITIEC  120
HRKENHPNNN NNNNNNNNSN SNIMFMKATL CCEDRPDLIP ELIRELKDLN LTVIGADIGC  180
LGGRMKSILL LYYKLDSNND GVVCNVSAIK QSLMGVLTRI ISWSSASTSS FRVTSKRQRF  240
FFSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859517.10.0transcription factor bHLH51 isoform X2
TrEMBLA0A0K9RWK70.0A0A0K9RWK7_SPIOL; Uncharacterized protein
STRINGXP_010689462.11e-111(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.15e-40bHLH family protein