PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_026020_gcng.t2
Common NameSOVF_026020
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 245aa    MW: 27876.6 Da    PI: 8.6038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_026020_gcng.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.16.7e-135197454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +h ++E+rRRdriN  +++Lr+l+Pk+     k ++Ka+ Le++ve +k+L
  Sp_026020_gcng.t2 51 NHRQAEKRRRDRINGQLARLRRLIPKS----EKQMDKAALLERVVEQVKDL 97
                       799***********************8....577************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.7234797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1350106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-1350104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-951100No hitNo description
PfamPF000101.4E-105197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-953103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00164150201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MPHHFNATNT TSSSMHLQEL PANCYALEFQ EPFEGFAEFE DKASAADSSH NHRQAEKRRR  60
DRINGQLARL RRLIPKSEKQ MDKAALLERV VEQVKDLKRK ASEISKIFTI PSEIDDITIE  120
CHRKENHPNN NNNNNNNNNS NSNIMFMKAT LCCEDRPDLI PELIRELKDL NLTVIGADIG  180
CLGGRMKSIL LLYYKLDSNN DGVVCNVSAI KQSLMGVLTR IISWSSASTS SFRVTSKRQR  240
FFFSS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859517.11e-160transcription factor bHLH51 isoform X2
TrEMBLA0A0K9RUU50.0A0A0K9RUU5_SPIOL; Uncharacterized protein
STRINGXP_010689462.11e-109(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.14e-38bHLH family protein