PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_026180_qgyj.t1
Common NameSOVF_026180
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family FAR1
Protein Properties Length: 230aa    MW: 26271.8 Da    PI: 6.2571
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_026180_qgyj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.22e-2187188290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.............tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                        fY+++A+ vGFs+rk +++ +  ++ + ++t+vCs  g +++ k+k             +e++ r+ + trt+C+a+l+vk++++g++ev +
  Sp_026180_qgyj.t1  87 FYQKHASAVGFSIRKGNTRFKVGTRIVLEKTYVCSAAGVTNNGKNKktkvqtvvpvvpkKERKPRQVSITRTQCRACLRVKMNSEGRYEVVN 178
                        9*************************************99998888899********888888889999*********************** PP

               FAR1  81 leleHnHela 90 
                         +  HnH+l+
  Sp_026180_qgyj.t1 179 HVIMHNHDLT 188
                        ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.7E-1887188IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MENLIRSVIQ STQTIQVPVE PDIQDATMED VLYNCIENNA LAQEREEEEA MEAEEQDIIS  60
DSEEPDQDIV GTQMGYTAET VEELLGFYQK HASAVGFSIR KGNTRFKVGT RIVLEKTYVC  120
SAAGVTNNGK NKKTKVQTVV PVVPKKERKP RQVSITRTQC RACLRVKMNS EGRYEVVNHV  180
IMHNHDLTRS QWHYLHRSER QITEEKREAI ETMQKSGNSY ILIVKLLCSV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021840791.11e-131protein FAR1-RELATED SEQUENCE 5-like, partial
TrEMBLA0A0K9RUT01e-170A0A0K9RUT0_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-08FAR1-related sequence 5