PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_027620_xdmn.t1

Common Name

SOVF_027620

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

SRS

Protein Properties

Length: 218aa MW: 23804.4 Da PI: 8.9474

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_027620_xdmn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	184.8	3.4e-57	11	157	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssa 94 ++t+sCqdCGn+ak+dC+h+RCRtCCksr+f+CathvkstWvp+a+rr rq+q+++++ + ++ + ++ ++ +ls+ + ++ Sp_027620_xdmn.t1 11 TNTTSCQDCGNKAKRDCEHTRCRTCCKSRSFQCATHVKSTWVPVARRRARQRQHHQQHPQLR--LSATSLDHFNQY-LPLPLSLSNIHH-HT 98 56789*******************************************988877543332..333333333333.233333333332.33 PP DUF702 95 eskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ le ++P+ev+s+a frc+rvss d+ +++aYqt++s+gGhvfkG+LydqG+ Sp_027620_xdmn.t1 99 PTSAGLEGGNFPAEVNSSATFRCIRVSSEDNVVDQYAYQTSISVGGHVFKGVLYDQGPT 157 3456889999*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.4E-55	13	157	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.6E-24	15	57	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.8E-22	109	156	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MRSSSGGSSS TNTTSCQDCG NKAKRDCEHT RCRTCCKSRS FQCATHVKST WVPVARRRAR 60 QRQHHQQHPQ LRLSATSLDH FNQYLPLPLS LSNIHHHTPT SAGLEGGNFP AEVNSSATFR 120 CIRVSSEDNV VDQYAYQTSI SVGGHVFKGV LYDQGPTTAL VTTTSDHHPF NISASTVTVA 180 ATHPGGGGEN LYHPPSLYSG PSFNAFLPGM QFFPHPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:12361963, ECO:0000269\|PubMed:16740145, ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18811619, ECO:0000269\|PubMed:20154152, ECO:0000269\|PubMed:22318676}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by ESR1 and ESR2. {ECO:0000269\|PubMed:21976484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849934.1	1e-162	protein SHI RELATED SEQUENCE 1
Swissprot	Q9SD40	1e-54	SRS1_ARATH; Protein SHI RELATED SEQUENCE 1
TrEMBL	A0A0K9RW43	1e-161	A0A0K9RW43_SPIOL; Uncharacterized protein
STRING	XP_010690810.1	3e-78	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-45	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]