PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_027850_fyae.t1

Common Name

SOVF_027850

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 362aa MW: 39511.3 Da PI: 6.0615

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_027850_fyae.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49	1.4e-15	22	64	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg+++++E l++d+++ lG++ W+ Ia++++ gRt++++k++w+ Sp_027850_fyae.t1 22 RGSFSPQEAALIIDLHRILGNR-WSQIAKYLP-GRTDNEVKNFWN 64 899*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	4.31	1	16	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.4E-10	2	28	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.19E-20	3	71	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.274	17	71	IPR017930	Myb domain
SMART	SM00717	4.2E-15	21	69	IPR001005	SANT/Myb domain
Pfam	PF00249	6.1E-14	22	65	IPR001005	SANT/Myb domain
CDD	cd00167	3.43E-11	24	64	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-19	29	67	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
LQRCGKSCRL RWINYLRPDL KRGSFSPQEA ALIIDLHRIL GNRWSQIAKY LPGRTDNEVK 60 NFWNSSIKKR LLSQVAAAAA AAPNIISNDL HLNYLPTTTS SNTLLTHDDN NNHHLSGGFT 120 NFFPSLNNSV ISPNFQGFDN PNNDDLINLP LITPHNLLPP INSYDNNPTL SSPLGFQHFL 180 TEVGINNHQF VNQDQEYTCP QASSLYAPPI YDDDDQAIMM KMKITTAMMM AGVVPIMPKL 240 ETMGSSFEGE DCHSIMIPSS SHDHVIPKSL LVSSSSSSSC MPNTQQLDYY NYVDIMDDNE 300 QHVMIPPTSS SSSSSPPSPP PPSLSSSLAA AATTTTTATG LPCGGTGRQV GLNPSSSSCW 360 NA

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

LQRCGKSCRL RWINYLRPDL KRGSFSPQEA ALIIDLHRIL GNRWSQIAKY LPGRTDNEVK  60
NFWNSSIKKR LLSQVAAAAA AAPNIISNDL HLNYLPTTTS SNTLLTHDDN NNHHLSGGFT  120
NFFPSLNNSV ISPNFQGFDN PNNDDLINLP LITPHNLLPP INSYDNNPTL SSPLGFQHFL  180
TEVGINNHQF VNQDQEYTCP QASSLYAPPI YDDDDQAIMM KMKITTAMMM AGVVPIMPKL  240
ETMGSSFEGE DCHSIMIPSS SHDHVIPKSL LVSSSSSSSC MPNTQQLDYY NYVDIMDDNE  300
QHVMIPPTSS SSSSSPPSPP PPSLSSSLAA AATTTTTATG LPCGGTGRQV GLNPSSSSCW  360
NA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-24	3	71	40	108	B-MYB
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862075.1	0.0	transcription factor MYB46
TrEMBL	A0A0K9RW33	0.0	A0A0K9RW33_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010685365.1	7e-96	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13890.2	1e-42	myb domain protein 26