PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_028090_pzqt.t1

Common Name

SOVF_028090

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 201aa MW: 22924.8 Da PI: 4.9892

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_028090_pzqt.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	44.4	2.9e-14	11	96	1	92
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffk++ p +++++ + +p f+e+ + + +k+++l++ W v + + ++ ++++GW++ v++ L g+f+vFk+dg s+fe Sp_028090_pzqt.t1 11 FFKTFRPDHYSET--MKIPDAFLEHLST--KIPKKVILKNCFDDHWPVGI--VENEDGLFFQEGWSKLVSDYPLLGGEFMVFKYDGYSTFEI 96 8899955444444..8*****65554..48899***********..99999*************************99888864 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-18	3	96	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.71E-18	4	97	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.574	9	102	IPR003340	B3 DNA binding domain
CDD	cd10017	3.53E-12	9	97	No hit	No description
SMART	SM01019	5.5E-9	11	107	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.8E-11	11	95	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGSSEEKLPE FFKTFRPDHY SETMKIPDAF LEHLSTKIPK KVILKNCFDD HWPVGIVENE 60 DGLFFQEGWS KLVSDYPLLG GEFMVFKYDG YSTFEIRTPN TSHFKKQPVT GCFAGQEEAK 120 TPTEEDNEDE EDLVVDQAEN SAIRKNLGRG GNYSFTGYHV KNLGKGITDL FPSNNPFFVT 180 KIRKNDGRKD LVLFFSPCNL A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021841505.1	1e-149	B3 domain-containing protein At3g06220-like
TrEMBL	A0A0K9RU71	1e-147	A0A0K9RU71_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06220.1	3e-15	B3 family protein