PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_028480_oaxd.t1
Common NameSOVF_028480
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 398aa    MW: 42718.1 Da    PI: 6.057
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_028480_oaxd.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_164.42.1e-20300362163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+elkr+rrkq+NRe+ArrsR+RK+ae++eL+++++ L++eN  L++el++ +  +++l +e+
  Sp_028480_oaxd.t1 300 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEGLKEENANLRSELNRFRSDYEQLVAEN 362
                        89********************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.9E-29195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.0E-47134264No hitNo description
Gene3DG3DSA:1.20.5.1702.6E-16293358No hitNo description
SMARTSM003385.7E-21300364IPR004827Basic-leucine zipper domain
PfamPF001701.9E-18300362IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.794302365IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-11303359No hitNo description
CDDcd147023.90E-22305350No hitNo description
PROSITE patternPS000360307322IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MGESETEKPD KEPKTPVAVS AQEQSSATST ATVNAEWPGF QAYSPIPPPG YMASSPQAHP  60
YMWGVQHMMP PYGTPPHPYM AMYPHGGLYA HPSMPPGSYP FNPYAIPPPN GLADASGNIP  120
ASADVEAKHH EGKEKLPIKR SKGSLGSLNM ITGKNNEDGK TTRPAANGSC SKSAESASDG  180
SSEGSDTNSQ NDSEGRQEGQ EADASHSGNS AHVAQNGVLN APHTMVNHAM AMVPMPGPGA  240
PVPVSGPATN LNIGMDYWGA PASSPIQAMR GNVSSAPVAT GIVPVGSRDN LQSQLWLQDE  300
RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEGLKEE NANLRSELNR FRSDYEQLVA  360
ENAALKERLG EIPEDLGSNR AEHHMITETQ ESSKTDQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316322RRSRLRK
2316323RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021851857.10.0bZIP transcription factor 16-like isoform X1
SwissprotQ501B21e-155BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0K9RU140.0A0A0K9RU14_SPIOL; Uncharacterized protein
STRINGXP_010677384.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-134basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]