PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_029840_tguk.t1
Common NameSOVF_029840
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ZF-HD
Protein Properties Length: 365aa    MW: 38403.3 Da    PI: 8.2016
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_029840_tguk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.82.3e-3260117258
        ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                        ++v YkeC+kNhAas+Ggha+DGC+Efmp ++++  ++++l+CaACgCHRnFHRr+++
  Sp_029840_tguk.t1  60 QHVSYKECMKNHAASIGGHALDGCCEFMPGPTANlLDPTSLTCAACGCHRNFHRRDPD 117
                        6799******************************99*******************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.2E-2662116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-1962115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.31164115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.4E-2864115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.24E-16188257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27189258IPR009057Homeodomain-like
TIGRFAMsTIGR015654.6E-25199255IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAMDFISGPT ATSAATNTAF PRTPDSDTDT PPHLPPAKRI HLHHHHHNNN SSSNNSQLEQ  60
HVSYKECMKN HAASIGGHAL DGCCEFMPGP TANLLDPTSL TCAACGCHRN FHRRDPDDPA  120
PLHHLIPPSA ARRAHSPPSA SQLLLSLSGH AQSPSGPSDH EMMQTPTTVG SGGGGIVMGY  180
YTSNNGVGSG GQNGSFQSKK RFRTKFSQDQ KEKMYEFSEK IGWRLKKGEE KLVQDFCKEV  240
GVDRCVFKVW MHNNKHSASP SAIAIATASA TVIPTATATA TGSATVSGAA LALASSQRND  300
NTGISTATTS ITTSSNGKHG NTNNSSNNNN NNTNNSNVGM NCGGVLGSAL EFNFANGGGQ  360
EAKAQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A4e-201992621780ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021842966.10.0zinc-finger homeodomain protein 8-like
TrEMBLA0A0K9RTK10.0A0A0K9RTK1_SPIOL; Uncharacterized protein
STRINGXP_010683186.12e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-46zinc finger homeodomain 1