PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_030030_whfc.t1
Common NameSOVF_030030
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 685aa    MW: 78339.6 Da    PI: 5.8858
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_030030_whfc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS372.94.1e-1143126831374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL++cAeav+  + ++a++lL++++++a+p gd++qR+a+yf+ +L+ar+++++selyka   ++ s   s + l+ +kl++ + P+ +
  Sp_030030_whfc.t1 312 LRTLLIQCAEAVACAEIRNANELLKQIRQHATPFGDSVQRVAHYFADGLEARMTGTGSELYKASDWKRFS---SYDILKGYKLYVSALPFQR 400
                        6789**********************************************************99999998...99***************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                         s+++aNq+I + +e+++++HiiDf+i +G+QWp+L+q+L+ Rp gpp+l+iTgv++p+sg   ++++eetg+rLa ++e++gvpfef++ +
  Sp_030030_whfc.t1 401 TSYFLANQTIAKLAEKASKLHIIDFGIFMGFQWPCLIQTLSRRPLGPPRLKITGVENPKSGfkPAQTVEETGRRLAGYCERFGVPFEFQA-I 491
                        ************************************************************999***************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a+r+++ ++e+++++++E ++V++ ++  rl+de+v+ +s+rd++L+lv+sl+P+++++   +   n++ F +rf eal++ys lfd +e++
  Sp_030030_whfc.t1 492 AQRWHTTKPEDFNIESDELVVVSCLYKSRRLPDETVDGSSPRDSFLRLVRSLNPELFIHGVINGTFNAPFFITRFREALYHYSCLFDVFEVT 583
                        ******************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        + re+++r+ +E+ l g++++n+vaceg+er+er et+++W++r ++a F +vpl+++++++a++++r  + + ++ve+++++lv gWk+r 
  Sp_030030_whfc.t1 584 MLREDQDRQLIENYLYGKDAMNIVACEGTERIERPETYKQWQMRHQRARFMQVPLNQEIVNKARAMVRANYHKDFMVEQDKHWLVHGWKGRI 675
                        ***********************************************************************888****************** PP

               GRAS 367 LvsvSaWr 374
                        L ++S+W+
  Sp_030030_whfc.t1 676 LSAMSCWK 683
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.222286663IPR005202Transcription factor GRAS
PfamPF035141.4E-111312683IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MNFDPAEGYP SFQSTVDCVN GNGSFKECGL YEEPISLNDR QYDLYYQTHE DNSEIPDFPD  60
ACLKYMNDIL MEEDLDDRPA TLQDYHALQA TEKSFYDVLC ADQRPLSDDL NISCSSERGT  120
GRYGTSVKSN WMIHQSQSVG FQQFDDTHHV LESTSEGSGS SSSFNYLRDG IADSPVSTLF  180
DNELSNVVNS GMSRVYREMN YNKGVEGGET REELGNGSKG RKNHHQRENA GDLEERSAKQ  240
LAANNEEYSE MEKFDDVLIS KEENNDISPC TSKSSVKEGS QNSEQDENPK GSKSKRKTKR  300
GKKKINTEVV DLRTLLIQCA EAVACAEIRN ANELLKQIRQ HATPFGDSVQ RVAHYFADGL  360
EARMTGTGSE LYKASDWKRF SSYDILKGYK LYVSALPFQR TSYFLANQTI AKLAEKASKL  420
HIIDFGIFMG FQWPCLIQTL SRRPLGPPRL KITGVENPKS GFKPAQTVEE TGRRLAGYCE  480
RFGVPFEFQA IAQRWHTTKP EDFNIESDEL VVVSCLYKSR RLPDETVDGS SPRDSFLRLV  540
RSLNPELFIH GVINGTFNAP FFITRFREAL YHYSCLFDVF EVTMLREDQD RQLIENYLYG  600
KDAMNIVACE GTERIERPET YKQWQMRHQR ARFMQVPLNQ EIVNKARAMV RANYHKDFMV  660
EQDKHWLVHG WKGRILSAMS CWKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-543166838375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861659.10.0scarecrow-like protein 30
TrEMBLA0A0K9RTH30.0A0A0K9RTH3_SPIOL; Uncharacterized protein
STRINGXP_010685728.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-159GRAS family protein