PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_030880_akat.t1

Common Name

SOVF_030880

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

HB-other

Protein Properties

Length: 503aa MW: 57085.8 Da PI: 6.4203

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_030880_akat.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.7	2.4e-19	20	75	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++R+ t++ql++Le+++++++yp++++++eLA++lgLte+q++ WF+ rR k+k+ Sp_030880_akat.t1 20 KRRRFKTPYQLQALEDFYNEHKYPTESMKTELAENLGLTEKQISGWFCHRRLKDKR 75 6777789***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-19	9	75	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.086	16	76	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-18	16	78	IPR009057	Homeodomain-like
SMART	SM00389	3.1E-20	19	80	IPR001356	Homeobox domain
Pfam	PF00046	7.0E-17	20	75	IPR001356	Homeobox domain
CDD	cd00086	1.89E-17	20	75	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MEDSIEVQCE ENKEFPEKNK RRRFKTPYQL QALEDFYNEH KYPTESMKTE LAENLGLTEK 60 QISGWFCHRR LKDKRIINGE LNPLGKQEIS SGVIQDRGSG LKQDSCSSNK QGDYRLADLR 120 EVESRRFGHN DIPVPEINYE QRVLDDGTEM DDTSSESNSA PQGSFYPHKR SPLNVETTEY 180 RAPNGFVAPN RRRAGPSGYL KIKGQTENVA VTAVKRQLGR QYQDDGPPLG IEFDPLPPGA 240 FESPCKNVNT DAYGVSEHVG SSSLDVGVIH KRHSLSTIQN QDKCVAPANS RSMHKSDSDT 300 FSYRQPKQKS HFPNHGRVLP VQKSPFGVAS YSARETSDYD GSMNNGIRHK HESSGMGSDS 360 YGGKFTNEPE DPWWHNYDNG NSVAVHRRER LDSRSVAPLV GHKDPIDTED RDRVPPSRIM 420 KDVELYAERR PVVEYHDFNR LKMRPNELRA GKRGREELLE EDYAAIRSSS QEPPQWSRQI 480 RGSTEMPSSF SEDETAETSS SMD

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MEDSIEVQCE ENKEFPEKNK RRRFKTPYQL QALEDFYNEH KYPTESMKTE LAENLGLTEK  60
QISGWFCHRR LKDKRIINGE LNPLGKQEIS SGVIQDRGSG LKQDSCSSNK QGDYRLADLR  120
EVESRRFGHN DIPVPEINYE QRVLDDGTEM DDTSSESNSA PQGSFYPHKR SPLNVETTEY  180
RAPNGFVAPN RRRAGPSGYL KIKGQTENVA VTAVKRQLGR QYQDDGPPLG IEFDPLPPGA  240
FESPCKNVNT DAYGVSEHVG SSSLDVGVIH KRHSLSTIQN QDKCVAPANS RSMHKSDSDT  300
FSYRQPKQKS HFPNHGRVLP VQKSPFGVAS YSARETSDYD GSMNNGIRHK HESSGMGSDS  360
YGGKFTNEPE DPWWHNYDNG NSVAVHRRER LDSRSVAPLV GHKDPIDTED RDRVPPSRIM  420
KDVELYAERR PVVEYHDFNR LKMRPNELRA GKRGREELLE EDYAAIRSSS QEPPQWSRQI  480
RGSTEMPSSF SEDETAETSS SMD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021843316.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
TrEMBL	A0A0K9RSS5	0.0	A0A0K9RSS5_SPIOL; Uncharacterized protein
STRING	XP_010673742.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	5e-70	HB-other family protein