PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_030920_ttan.t1
Common NameSOVF_030920
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 462aa    MW: 51667.1 Da    PI: 6.4407
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_030920_ttan.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS469.32.2e-143474591374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lLl+cA++vs+g+l +a+ +L+++s+laspdgd+mqR+a+yf+e L++r+++s++++y++l+ ++ +    see+ a+kl++e++P+lk
  Sp_030920_ttan.t1  47 LIHLLLACANHVSNGSLDNANLALEQISHLASPDGDTMQRIASYFAESLSERVLKSWPGIYRSLNFTKMP--VISEEILARKLYFELFPFLK 136
                        689*****************************************************************99..69****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        ++++++Nq Ilea++ge++vHiiD+++s+++QW+aL+qaL+ Rpegpp+lRiTgv++    +ke l ++++rL++ Ae+l++pf+fn++v++
  Sp_030920_ttan.t1 137 LAYVVTNQSILEAMDGEKMVHIIDLNASEPAQWIALIQALSVRPEGPPHLRITGVHQ----QKEVLDQLAHRLTDEAEKLDLPFQFNPVVCS 224
                        *********************************************************....9****************************** PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrll.............................................desvsles..erdevLk 229
                        +le+l++e+Lrvk+gEala+++vlqlh+ll                                                +s++   + d +L 
  Sp_030920_ttan.t1 225 KLENLDVEKLRVKTGEALAISSVLQLHTLLassddettmkkasslglfvnhvnggnnananrrrsspsndsssssP--TSINAsaKMDGFLA 314
                        *********************************************************************9998543..33333448899*** PP

               GRAS 230 lvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                         +++lsPk++v++eq+++hn++ ++er++eal+yy+alfd+le++lpr s er+kvE++llg+ei+n++aceg errerhe+lekW +rl++
  Sp_030920_ttan.t1 315 SLWGLSPKIMVITEQDSNHNGSGLMERLSEALYYYAALFDCLESSLPRVSIERRKVEKMLLGEEIKNIIACEGGERRERHEKLEKWIQRLDM 406
                        ******************************************************************************************** PP

               GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         GF+ vp+s+  + qa++ll+ ++ dgyr++ee+g++v++W+drpL+svSaWr
  Sp_030920_ttan.t1 407 GGFGCVPFSYMGMLQARRLLQGCSCDGYRIKEENGCVVICWQDRPLFSVSAWR 459
                        ****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.61621439IPR005202Transcription factor GRAS
PfamPF035147.5E-14147459IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MGPMLQDDGS SVTSSSPLEF FSRMSPNIGS SNPWLRELKP EERGLYLIHL LLACANHVSN  60
GSLDNANLAL EQISHLASPD GDTMQRIASY FAESLSERVL KSWPGIYRSL NFTKMPVISE  120
EILARKLYFE LFPFLKLAYV VTNQSILEAM DGEKMVHIID LNASEPAQWI ALIQALSVRP  180
EGPPHLRITG VHQQKEVLDQ LAHRLTDEAE KLDLPFQFNP VVCSKLENLD VEKLRVKTGE  240
ALAISSVLQL HTLLASSDDE TTMKKASSLG LFVNHVNGGN NANANRRRSS PSNDSSSSSP  300
TSINASAKMD GFLASLWGLS PKIMVITEQD SNHNGSGLME RLSEALYYYA ALFDCLESSL  360
PRVSIERRKV EKMLLGEEIK NIIACEGGER RERHEKLEKW IQRLDMGGFG CVPFSYMGML  420
QARRLLQGCS CDGYRIKEEN GCVVICWQDR PLFSVSAWRC RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-69354617381Protein SCARECROW
5b3h_A7e-69354616380Protein SCARECROW
5b3h_D7e-69354616380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021843310.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A0K9RSV50.0A0A0K9RSV5_SPIOL; Uncharacterized protein
STRINGXP_010673719.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]