PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_032200_gqrq.t1
Common NameSOVF_032200
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 280aa    MW: 31523.3 Da    PI: 8.3618
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_032200_gqrq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-194190255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       ++ GVr+++ +g+WvAeI+  +   ++ r++lg+f+taeeAa+a+++a+  l+g
  Sp_032200_gqrq.t1 41 KFVGVRQRP-SGKWVAEIKNTT---QKIRIWLGTFDTAEEAARAYDEAACLLRG 90
                       799******.7******99932...36**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-144190IPR001471AP2/ERF domain
PROSITE profilePS5103219.5334198IPR001471AP2/ERF domain
CDDcd000186.80E-334197No hitNo description
SMARTSM003801.0E-3641104IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-194198IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-284198IPR001471AP2/ERF domain
PRINTSPR003671.7E-84253IPR001471AP2/ERF domain
PRINTSPR003671.7E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEFQFQQLQH KENKPKQTCN NNNNNNKVVK SGIKTGTTKN KFVGVRQRPS GKWVAEIKNT  60
TQKIRIWLGT FDTAEEAARA YDEAACLLRG SNTRTNFVTT PSSDNTNSAL SRRIRNLVNQ  120
KKSLIRNNNT QPPPAPPTTT TSTTIKTTDD NNDAANTSLV LNQAVTFAGE NAYRPDLSGQ  180
FDCSWAFPQQ FPPPIPNDDL EMFRKHLSFT TTMADTGMMM NNANEVAMLE FERMKVERQI  240
SASLYAMNGV NDYLQCVFNA CDSNDPTWEP PMLYHNFCLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1630110381Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850894.11e-178ethylene-responsive transcription factor RAP2-11
TrEMBLA0A0K9RTC50.0A0A0K9RTC5_SPIOL; Uncharacterized protein
STRINGXP_010673981.11e-124(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-34related to AP2 11