PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_032420_fmtu.t1

Common Name

SOVF_032420

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

SBP

Protein Properties

Length: 994aa MW: 110669 Da PI: 5.935

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_032420_fmtu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	132.4	1.5e-41	127	203	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC +dls+ak+yhrrhkvCe+hska+++lv++++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+q+ Sp_032420_fmtu.t1 127 CQVEGCVSDLSKAKDYHRRHKVCEMHSKATNALVANIMQRFCQQCSRFHALQEFDEGKRSCRRRLAGHNKRRRKTQP 203 **************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	32.052	124	201	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.0E-32	124	188	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.92E-38	126	206	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.6E-29	127	200	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.59E-9	763	882	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-7	765	880	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.60E-7	766	880	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 994 aa Download sequence Send to blast
MEQAHRYHHH SIGTTELRVM GKRGLEWDLN DWKWDGDLFI ATPSNFQGQQ KFIPVNSSNT 60 SSSCSDDVQS AVDDDGRREL ERKRRVIVVE DDSLDESGNL TLKLGAPHMD YDNHNSGKKT 120 KFAGALCQVE GCVSDLSKAK DYHRRHKVCE MHSKATNALV ANIMQRFCQQ CSRFHALQEF 180 DEGKRSCRRR LAGHNKRRRK TQPEAAVQGN SLHDEQTNSV LLMSLLRILS NMHGNNRSNQ 240 TTDQDLVAQL LKSLANPSGL PTGKGLSGLL HESQKLLNGG MATGIGNSEK MLAFLSNGHL 300 NPPRVIDQNI PLPESEIPRK GLYAANSRGG EMQALSVQEP ISLFPIKDSP PTYSESIEGR 360 MKLNNFDLND AYVDSDDGME DLERSPANVT FATGSVDFPS WAGQDSHQSS PPQTSGNSDS 420 ASAPSPSSSS GEGQSRTDRI VFKLFGKEPS DFPTVLLGQI LDWLAHSPTE IESYIRPGCI 480 ILTIYLCLDE SLWEELCSDL SSCLTRLFDI SDDIFWRTGW VYVQVQNQIA LAHNGQVVLD 540 TSLSLQNSNC SRIMSVMPIA VSMDEQARFE VRGFNLSRSN TRLLCALEGK YLDQEATQES 600 TEDDAFVEEE GEIEHADLSC IIPNVTGRGF IEVEDHGLSN SFFPFIVAEK DICSEIRTLE 660 SVLKKNNEDA YGLNNKTLES WHQAMDFINE MGWLLHRSHL KSRLGDQDPN TIIFSFRRFK 720 WLMDFSMDHD WCAVVKKLLD IVVAGTTVGL GEHPSLKVAV SEMGLLHRAV RRNSRPMVEL 780 LLRYVPVNVN VNLSEEFIPS NDDDDGKERF LFRPDAQGPA GLTPLHVAAG TDGSENILDA 840 LTNDPGKNGI EAWKNARDST GATPEDYARL RGHYSYIHLI QRKIYRSSAS ASGHVVVDIP 900 GVASGAVSSF EVGRTAPFNL NQNQNCKVCD QKKMSVYYAR NRTTRTSLVY RPAMLSMVGI 960 AAVCVCVALL FKSMPNVVCL FQPFRWEMLN YGSS

Sequence ? help Back to Top

Protein Sequence Length: 994 aa Download sequence Send to blast

MEQAHRYHHH SIGTTELRVM GKRGLEWDLN DWKWDGDLFI ATPSNFQGQQ KFIPVNSSNT  60
SSSCSDDVQS AVDDDGRREL ERKRRVIVVE DDSLDESGNL TLKLGAPHMD YDNHNSGKKT  120
KFAGALCQVE GCVSDLSKAK DYHRRHKVCE MHSKATNALV ANIMQRFCQQ CSRFHALQEF  180
DEGKRSCRRR LAGHNKRRRK TQPEAAVQGN SLHDEQTNSV LLMSLLRILS NMHGNNRSNQ  240
TTDQDLVAQL LKSLANPSGL PTGKGLSGLL HESQKLLNGG MATGIGNSEK MLAFLSNGHL  300
NPPRVIDQNI PLPESEIPRK GLYAANSRGG EMQALSVQEP ISLFPIKDSP PTYSESIEGR  360
MKLNNFDLND AYVDSDDGME DLERSPANVT FATGSVDFPS WAGQDSHQSS PPQTSGNSDS  420
ASAPSPSSSS GEGQSRTDRI VFKLFGKEPS DFPTVLLGQI LDWLAHSPTE IESYIRPGCI  480
ILTIYLCLDE SLWEELCSDL SSCLTRLFDI SDDIFWRTGW VYVQVQNQIA LAHNGQVVLD  540
TSLSLQNSNC SRIMSVMPIA VSMDEQARFE VRGFNLSRSN TRLLCALEGK YLDQEATQES  600
TEDDAFVEEE GEIEHADLSC IIPNVTGRGF IEVEDHGLSN SFFPFIVAEK DICSEIRTLE  660
SVLKKNNEDA YGLNNKTLES WHQAMDFINE MGWLLHRSHL KSRLGDQDPN TIIFSFRRFK  720
WLMDFSMDHD WCAVVKKLLD IVVAGTTVGL GEHPSLKVAV SEMGLLHRAV RRNSRPMVEL  780
LLRYVPVNVN VNLSEEFIPS NDDDDGKERF LFRPDAQGPA GLTPLHVAAG TDGSENILDA  840
LTNDPGKNGI EAWKNARDST GATPEDYARL RGHYSYIHLI QRKIYRSSAS ASGHVVVDIP  900
GVASGAVSSF EVGRTAPFNL NQNQNCKVCD QKKMSVYYAR NRTTRTSLVY RPAMLSMVGI  960
AAVCVCVALL FKSMPNVVCL FQPFRWEMLN YGSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-31	126	200	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021839735.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_021842942.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A0K9RUQ7	0.0	A0A0K9RUQ7_SPIOL; Uncharacterized protein
STRING	XP_010678887.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]