PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_032700_tnie.t1
Common NameSOVF_032700
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 261aa    MW: 30148.9 Da    PI: 7.663
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_032700_tnie.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.9e-193179355
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr++  +g+WvAeIr+p++   r r +lg+f taeeAa a+++a+++l+g
  Sp_032700_tnie.t1 31 YRGVRQRT-WGKWVAEIREPKK---RSRLWLGSFSTAEEAALAYDEAARRLYG 79
                       9****999.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.72E-312989No hitNo description
Gene3DG3DSA:3.30.730.101.6E-303088IPR001471AP2/ERF domain
SMARTSM003806.0E-363093IPR001471AP2/ERF domain
PROSITE profilePS5103222.9583087IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-213088IPR016177DNA-binding domain
PfamPF008476.5E-133179IPR001471AP2/ERF domain
PRINTSPR003672.0E-103142IPR001471AP2/ERF domain
PRINTSPR003672.0E-105369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDNSKKSTLS KPWKKGPARG KGGPQNATCM YRGVRQRTWG KWVAEIREPK KRSRLWLGSF  60
STAEEAALAY DEAARRLYGP DAYLNLPHLR CSFNPLNKSQ RFRWFPSKNF ISMFPASSGS  120
STPSLLNVNV QPSLHVIHQR LQEFKNKSEP KVVKSDKRVL VEQVSSNEHI NWEKPQIDLN  180
EFLEQMGVLK EGETTYTNDK VDAVNNHDET AKEIFIEEMN SEWNELVEIL REDHQQAESS  240
RSFGDYTMDE LITLPPTIWD F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-183187360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00411DAPTransfer from AT3G57600Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847277.10.0dehydration-responsive element-binding protein 2F
SwissprotQ9SVX58e-79DRE2F_ARATH; Dehydration-responsive element-binding protein 2F
TrEMBLA0A0K9RUZ40.0A0A0K9RUZ4_SPIOL; Uncharacterized protein
STRINGXP_010672841.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57600.15e-69ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]