PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_033230_yrso.t1
Common NameSOVF_033230
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family WRKY
Protein Properties Length: 209aa    MW: 23811.2 Da    PI: 8.7829
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_033230_yrso.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.22.2e-15180207229
                        --SS-EEEEEEE--TT-SS-EEEEEE-S CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCts 29 
                        +Dgy+WrKYGqK+ +++++pr+Y++C++
  Sp_033230_yrso.t1 180 KDGYQWRKYGQKVTRDNPCPRAYFKCSF 207
                        8*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-14168207IPR003657WRKY domain
PROSITE profilePS5081114.802174209IPR003657WRKY domain
SuperFamilySSF1182909.29E-13176207IPR003657WRKY domain
SMARTSM007749.4E-6179209IPR003657WRKY domain
PfamPF031069.8E-11180207IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDYSTSWLSH SSPSLDISNA NTLRLFDDAP VRDTNIFKQD PSPPRPPSTN LWHKDESGAL  60
VEELKRVNAE NKRLTEMLTV VCENYNELKR QLVDHMSKQS SSNNEITKKR KLDNNNNNNN  120
NNNNNNNNGL VVRTNNNNNG ESSSSDEEDS YGKPKEETIK AKITRVAVRT QASDSTLILK  180
DGYQWRKYGQ KVTRDNPCPR AYFKCSFAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0819520.0AB081952.1 Spinacia oleracea Spwrky-1 mRNA for WRKY transcription factor 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021866331.11e-153probable WRKY transcription factor 40
TrEMBLA0A0K9RUC81e-152A0A0K9RUC8_SPIOL; Uncharacterized protein (Fragment)
STRINGXP_010691587.17e-88(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.17e-37WRKY DNA-binding protein 40