PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_033430_uuxs.t1
Common NameSOVF_033430
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family DBB
Protein Properties Length: 180aa    MW: 19765.6 Da    PI: 4.7974
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_033430_uuxs.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.46.9e-09334436
           zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                       + C+ +e+  +++fC  ++  lC++C ++ H +
  Sp_033430_uuxs.t1  3 MLCDICESAAASFFCAADEAALCNSCDEKVH-S 34
                       78***************************99.3 PP
2zf-B_box21.83.8e-075487436
           zf-B_box  4 rkCpeHeeke.lqlfCedCqqllCedClleeHkg 36
                        +C+ +e+ + + ++Ce +++ lC +C +  H g
  Sp_033430_uuxs.t1 54 LRCDICENAPgAFFYCEIDGTSLCLQCDTDVHVG 87
                       69******888******************99966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.6E-10147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.452147IPR000315B-box-type zinc finger
PfamPF006431.6E-7344IPR000315B-box-type zinc finger
SMARTSM003361.7E-85197IPR000315B-box-type zinc finger
CDDcd000217.20E-65585No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRMLCDICES AAASFFCAAD EAALCNSCDE KVHSCNKLAS RHVRVRLADP KAALRCDICE  60
NAPGAFFYCE IDGTSLCLQC DTDVHVGGTQ VHARYLLFKQ QVEFPMDDIA STSMNELQIV  120
GREINPDNLQ PSSSILAPTL VNEPTCRKVV DLNISPQPSI ENSSNNQLLV MNTRIARSLI
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853214.11e-131B-box zinc finger protein 18-like isoform X3
SwissprotC0SVM52e-54BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0K9RSE91e-130A0A0K9RSE9_SPIOL; Uncharacterized protein
STRINGXP_002512996.14e-58(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.19e-45DBB family protein