PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_033430_uuxs.t2

Common Name

SOVF_033430

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

DBB

Protein Properties

Length: 213aa MW: 23282.1 Da PI: 4.7728

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_033430_uuxs.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27	9.1e-09	3	34	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 + C+ +e+ +++fC ++ lC++C ++ H + Sp_033430_uuxs.t2 3 MLCDICESAAASFFCAADEAALCNSCDEKVH-S 34 78***************************99.3 PP
2	zf-B_box	24.5	5.6e-08	54	86	4	36
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36 +C+ +e+ ++ ++Ce +++ lC +C + H g Sp_033430_uuxs.t2 54 LRCDICENAPAFFYCEIDGTSLCLQCDTDVHVG 86 69**************************99965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	8.6E-10	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.452	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.2E-7	3	44	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.186	51	96	IPR000315	B-box-type zinc finger
SMART	SM00336	7.9E-12	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	2.3E-6	54	85	IPR000315	B-box-type zinc finger
CDD	cd00021	8.65E-8	55	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MRMLCDICES AAASFFCAAD EAALCNSCDE KVHSCNKLAS RHVRVRLADP KAALRCDICE 60 NAPAFFYCEI DGTSLCLQCD TDVHVGGTQV HARYLLFKQQ VEFPMDDIAS TSMNELQIVG 120 REINPDNLQP SSSILAPTLV NEPTCRKVVD LNISPQPSIE NSSNNQTTVG RETNPDIHAS 180 SATVLAPGNE HTDRKVIDLN TSPRRSLENS SNN

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). Acts as a negative regulator of blue light-mediated inhibition of hypocotyl elongation through increase of bioactive gibberellin levels (PubMed:20872270). Acts as a repressor of thermotolerance by modulating expression of a set of heat shock-responsive genes (PubMed:23238922). {ECO:0000269\|PubMed:18540109, ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By blue light (PubMed:20872270) and heat shock (at protein level) (PubMed:23238922). {ECO:0000269\|PubMed:20872270, ECO:0000269\|PubMed:23238922}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021853213.1	1e-157	B-box zinc finger protein 18-like isoform X2
Swissprot	Q9SJU5	1e-55	BBX18_ARATH; B-box zinc finger protein 18
TrEMBL	A0A0K9RSE4	1e-155	A0A0K9RSE4_SPIOL; Uncharacterized protein
STRING	XP_002512996.1	6e-60	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21320.1	7e-46	DBB family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang X,Lin R Light signaling differentially regulates the expression of group IV of the B-box zinc finger family. Plant Signal Behav, 2017. 12(9): p. e1365213 [PMID:28922622]