PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_034090_dnua.t1
Common NameSOVF_034090
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 814aa    MW: 89432.8 Da    PI: 5.8374
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_034090_dnua.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.52.2e-894538132374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                        +++L+++A+ + +g+++laq++Larl+++ s  ++p+ R+a y++eAL+  l+  ++ + +a p+++ ++++++++++a+klfsevsPi +f
  Sp_034090_dnua.t1 453 KDQLFKAADLILTGNFSLAQEILARLNHQLSLPAKPLIRAALYVKEALQMLLLT-GNPV-AAPPSKTLTPYDVVHKMNAYKLFSEVSPITQF 542
                        689*************************************************98.4444.46788888999********************* PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak. 184
                        +++t+ qaIlea++ ++++HiiDfdi+ G+QW++L+q+L  R++g+psl+iT++++ +s++  el  ++e+L +fA+ +g+ f+ +v+  + 
  Sp_034090_dnua.t1 543 TNFTCTQAILEALDDADAIHIIDFDIGCGAQWASLIQELPLRKRGAPSLKITALAP-SSSHPFELGLIRENLMQFANDIGIAFDLQVVNLDl 633
                        *******************************************************9.667999************************85443 PP

               GRAS 185 .rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                         + ++ +l ++r++++E++aV++ +   +      + +s  + +L+++k+ sPk+vv  ++  d+ + +F ++++++l++++ +++sl+   
  Sp_034090_dnua.t1 634 fDPSSCSLPNFRTSEDESIAVSIPIWSSS------NRPSMLPPILEFIKQCSPKIVVSLDRVFDRCDVPFPQHLVHTLDWCTNFLESLDGL- 718
                        333455666778888********994333......33444556*********************************************765. PP

               GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpL 367
                          +s+  +kvE+++++++i+n v  +        e++ +W++ + +aGF+p+++s+++++qa++++++++++g++ve++++slvl W++r+L
  Sp_034090_dnua.t1 719 NVASDIVNKVEKFFVQPRIENTVLGRVHF----PEKMPHWKNLFASAGFSPMQFSNFTETQADYVVKRTPGRGFHVEKRQASLVLSWQRREL 806
                        579999*****************987665....9********************************************************** PP

               GRAS 368 vsvSaWr 374
                        v++SaWr
  Sp_034090_dnua.t1 807 VAASAWR 813
                        ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.753426793IPR005202Transcription factor GRAS
PfamPF035147.7E-87453813IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 814 aa     Download sequence    Send to blast
MPYNLQGKGV AELSGLISQI SSSLPPNWKT LDNFQEQQQQ QQISEGEEDD EEEDFEKQAA  60
LNIPKKLKLK LKQKQISATQ TSSVDSEPTS TLDTTSPPTS TSTLSSSFTN GQHSGNKDIS  120
AGVADPSCAR KEDWPSELND LHQGSDNVTA ASSAGERLGG GSGGGGGGIG LEDWDALFPT  180
GDGALLPWII GDAEDPSLGL KHLLQSGTIV DYEGNAGLGD VDQGPGFDTH SMSPPRNQPQ  240
LLPHHPLAVV GNEGNGGSAN FVSFIGSEFG NNGKIGLISP NCSSGVSNNG GLNTTNSLIL  300
GSIPANFQHQ FEVGDEKPQI FNPQLVMNQQ QAQSPGNPSF FMPPWSYCQL DQHLLQPPTK  360
RHNPGVVLDP NLVSKNPFHD QGHDLLMRKQ QVGFQQFPMG LPPQLVPPHL QQKQMMVPKL  420
NHQQQHQHQH QHQQHFPLPG LQHQHQLQEQ AIKDQLFKAA DLILTGNFSL AQEILARLNH  480
QLSLPAKPLI RAALYVKEAL QMLLLTGNPV AAPPSKTLTP YDVVHKMNAY KLFSEVSPIT  540
QFTNFTCTQA ILEALDDADA IHIIDFDIGC GAQWASLIQE LPLRKRGAPS LKITALAPSS  600
SHPFELGLIR ENLMQFANDI GIAFDLQVVN LDLFDPSSCS LPNFRTSEDE SIAVSIPIWS  660
SSNRPSMLPP ILEFIKQCSP KIVVSLDRVF DRCDVPFPQH LVHTLDWCTN FLESLDGLNV  720
ASDIVNKVEK FFVQPRIENT VLGRVHFPEK MPHWKNLFAS AGFSPMQFSN FTETQADYVV  780
KRTPGRGFHV EKRQASLVLS WQRRELVAAS AWRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2447081321375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021853011.10.0scarecrow-like protein 6
TrEMBLA0A0K9RSB80.0A0A0K9RSB8_SPIOL; Uncharacterized protein
STRINGXP_010695123.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-91GRAS family protein