PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_034650_atqa.t1
Common NameSOVF_034650
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GATA
Protein Properties Length: 298aa    MW: 32807.5 Da    PI: 6.3721
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_034650_atqa.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16219254134
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++Cg ++  Tp++Rrgp+g++tLCnaCGl+++ kg
  Sp_034650_atqa.t1 219 CRHCGISEkaTPMMRRGPEGPRTLCNACGLMWANKG 254
                        *******99************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.24376111IPR010399Tify domain
SMARTSM009794.8E-1176111IPR010399Tify domain
PfamPF062005.1E-1380110IPR010399Tify domain
PfamPF062033.4E-16143185IPR010402CCT domain
PROSITE profilePS5101713.245143185IPR010402CCT domain
SMARTSM004018.9E-11213266IPR000679Zinc finger, GATA-type
PROSITE profilePS501148.59213274IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-12215264No hitNo description
Gene3DG3DSA:3.30.50.109.2E-15217260IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.5E-14219254IPR000679Zinc finger, GATA-type
CDDcd002022.48E-13219261No hitNo description
PROSITE patternPS003440219246IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDDLHGDDAQ MHMTEAEQQM HAHYLHEQSH GMHHMSNGNG MEDEHDDGVA GGEGMDGELH  60
NDPGNVSDTH GGLMVANADN NQLTLSFQGQ VYVFDSVSPE KVQAVLLLLG GREIPSTVPA  120
VPLTPANNRG VAPTPQRFNV PQRLASLLRF REKRKERNFD KKIRYTVRKE VALRMQRNKG  180
QFTSSKPSQD ESSSGATSWE SNQNWGPDGP LPLQQEVCCR HCGISEKATP MMRRGPEGPR  240
TLCNACGLMW ANKGALRDLS KSAVQGGQNL PFTRNEENGN FEANQQIVRV AGNVSESV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00198DAPTransfer from AT1G51600Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845718.10.0GATA transcription factor 28
RefseqXP_021845719.10.0GATA transcription factor 28
SwissprotQ8H1G01e-125GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A0K9RS540.0A0A0K9RS54_SPIOL; Uncharacterized protein
STRINGXP_010696086.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.21e-127ZIM-LIKE 2